Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0647 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGCTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGGAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGATTCTAAGCCCCCGCTTGTGAATTCGATTGCCAATGGTCAAAACAGGTCAGACCTGTCGAATAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCTGAAGATCCACCTACAAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCAACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCGCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAGCGGCGTACAATCACTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAA 1410 44.33 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSDSKPPLVNSIANGQNRSDLSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKRRTITHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6924778 6928450 - ClG42_01g0064700.10 Clacu01g0647 240031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0647 469 FunFam UBX domain-containing protein 6 343 434 - -
Clacu01g0647 469 SUPERFAMILY PUG domain-like 177 241 IPR036339 -
Clacu01g0647 469 MobiDBLite consensus disorder prediction 68 85 - -
Clacu01g0647 469 SMART PGNneu 180 247 - -
Clacu01g0647 469 Pfam UBX domain 350 430 IPR001012 GO:0005515(InterPro)
Clacu01g0647 469 Gene3D - 343 435 - -
Clacu01g0647 469 MobiDBLite consensus disorder prediction 15 101 - -
Clacu01g0647 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - GO:0050832(PANTHER)
Clacu01g0647 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Clacu01g0647 469 SMART ubx_3 346 435 IPR001012 GO:0005515(InterPro)
Clacu01g0647 469 MobiDBLite consensus disorder prediction 15 52 - -
Clacu01g0647 469 MobiDBLite consensus disorder prediction 53 67 - -
Clacu01g0647 469 CDD PUB 167 263 - -
Clacu01g0647 469 Pfam PUB domain 179 249 IPR018997 -
Clacu01g0647 469 CDD UBX_UBXN6 354 434 - -
Clacu01g0647 469 SUPERFAMILY Ubiquitin-like 320 433 IPR029071 -
Clacu01g0647 469 Gene3D - 174 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0647 Clacu-Chr1:6924778 Clacu11g1443 Clacu-Chr11:25430634 7.60E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46975 PF00789 UBX 1.80E-05 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0647 K14011 - csv:101209321 823.157