Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0650 ATGGGTGATGAGGCCGCCAAGGTTGTTGTTCCTCGAAACTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACTATTATTGGGCCACCTAACACTGTCCATGAAGGACGCATCTATCAACTCAAGTTATTTTGTGGACAGGACTATCCTGATAATCCTCCAAATGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTAATGAAGATGGAAGAATAGACCAAAAGGGGCTAGTATTGAAATGTTGCATTCTTTGA 480 42.5 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDGRIDQKGLVLKCCIL 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6952646 6958191 - ClG42_01g0065000.10 Clacu01g0650 240034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0650 159 SUPERFAMILY UBC-like 9 141 IPR016135 -
Clacu01g0650 159 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 2 144 - -
Clacu01g0650 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 43 134 - GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0006301(PANTHER)|GO:0070534(PANTHER)
Clacu01g0650 159 SMART ubc_7 14 158 - -
Clacu01g0650 159 Pfam Ubiquitin-conjugating enzyme 41 134 IPR000608 -
Clacu01g0650 159 MobiDBLite consensus disorder prediction 127 146 - -
Clacu01g0650 159 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Clacu01g0650 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 159 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0650 K10704 - - csv:101209154 326.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0650 Clacu-Chr1:6952646 Clacu07g0589 Clacu-Chr7:8689566 5.00E-67 dispersed
Clacu01g0650 Clacu-Chr1:6952646 Clacu08g1388 Clacu-Chr8:23928886 2.20E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g487 . . . . . Bpe10g00978 Bma14g01936 . Cmo04g01096 . Cma04g01020 Cma04g00073 Car04g00955 Car04g00069 Sed02g0481 . Cpe01g01833 Bhi07g00380 Tan04g1525 Cmetu09g1222 Lac13g1355 . . . Cla07g00553 Cam07g0586 Cec07g0649 Cco07g0620 Clacu07g0589 Cmu07g0624 Cre07g0963 . Cone19ag0744 Cone6ag0372 Cone9ag0401 Lsi04g01108 . . Cme10g01611 . . . . . . . . . . Cmo15g01023 . Cma15g00976 . Car15g00922 Cpe13g00351 . . . . . . . . Cla01g00634 Cam01g0662 Cec01g0654 Cco01g0680 Clacu01g0650 Cmu01g0624 Cre09g1880 . . . Cme09g01348
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000459 4 2 3 5 4 3 6 2 3 2 3 3 6 2 3 5 3 7 6 3 3 3 3 3 2 2 2 18 4 3 118