Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0651 ATGCTTCTGGCGTGTTCCAGATTCATTAGTGACAACTTACTGTGTTGGGATATCAATTTTCGACGGAACATTTGCAACAGACTGACAGTTAAACCTTTGAAGTTCCCGCCAGAAATTCAAAGGATTCTTTGCAATTTCGAAATGAATAAAATCTTCCGGATAATGAATATCAATATTTCAACTCATGAATTACTCAATTCCACTCTGAGAAGTCCTAAATTTCTCACTCCGCTTCTACTCTTTCATGGTTCCAACAAGAATCTAACCTCAGATTCGGAGCTGGAACTCGATTCTGACAAGCTCGGTTATCGGTCTTCTATACCCACTTCTCGAAGAAGCTGGGTTTCTGAAGAACAGGTTGATCTCAGGGAGATTTCAAAAGGAAGGGAATTGAAGGTTCAGATAGACCCATGGCCGGAGTGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGAGTCCCATTTCTTAATGCCGAATTGGGTGCAAAAGATTTCAATCATATTCGGACTGCGTGTCTTGATTTTGCAAGGGATCGGTCTAACCTTATACGGCGCTTGTCCAGGAAAGATTTACAGGTGATTGCAGGATGTGGATGCCCAAGCACAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCACATGTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGCAACCTGCGGGGAGAATGTGAGAGGGCATATGCGAAGGCATGCGGAGATGAAGGAGGTCAGACTGTGGATGTCATGCGCGTTTTGTTATTTTATGGGCTTGATCACATCTCTGCTATGGTGGAGAGCAGACCATGTTGGAACAAGAAGGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAATATAGTGCAGGAGAACGTGAATCTGATCTTCTTAAGTCTAACGAGGCTACTTCAGCAGGAAATCATGAAATAAGTGCTTCAGCGACACGAGGCGACTGGCATTGTCCAAAATGCAACTTTTTCAACTTTTCTAGAAACATCAAGTGCTTGCGCTGTGGTAGTATACCCCTCGAGAGACTTCGGAAACTAAATGAGGATCAAGCTGATCTTCCGTTGAAGAAGGGCGACTGGATTTGTGACAAGTGTAATTTCTTGAACTTTGCTAAGAATTCAACATGTTTGCAATGCAAAGAGAAGCCTTTGAATCGACAGCTGAATCAAGGGGAGTGGGAATGCGAATCGTGCAACTATATCAATTTTAGAAAGAATACGCTATGCTTGAAGTGTGATCACCGACGACCGAAAGCACTAAATACTCGAAACGTCTCTGCTGTTCCTGCAGCTGAGAATGGAAACTACAGTTTCAGTAAGCCTAAATTCTCATCTGGTAAAGTTGGTAATAATGCAAGTAGGAAAAATGATGGTTGTATGTGGAGATTTGGTGAAAATGAGGGTGAAGATGATTCTGGACTTGTGGATTTTCCTATTGCTCGTTCTTCTGGAAGTGCAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAAAGGAGAAAAAACATGGAAAATGCAATAGATAAAGAAGAAGATCTAATCTTGAGATCTGACAATATCGAAAGAAGATTTGAGTTTGTTGAATCTACTGATGATGAAGACATCATCGAATGGTTTGGACACAAGCCAGAATCAATCAAATAG 1686 41.81 MLLACSRFISDNLLCWDINFRRNICNRLTVKPLKFPPEIQRILCNFEMNKIFRIMNINISTHELLNSTLRSPKFLTPLLLFHGSNKNLTSDSELELDSDKLGYRSSIPTSRRSWVSEEQVDLREISKGRELKVQIDPWPEWVDFMECLSKKGYFEGDRVPFLNAELGAKDFNHIRTACLDFARDRSNLIRRLSRKDLQVIAGCGCPSTDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGECERAYAKACGDEGGQTVDVMRVLLFYGLDHISAMVESRPCWNKKANDSVRKLLKDIVEYSAGERESDLLKSNEATSAGNHEISASATRGDWHCPKCNFFNFSRNIKCLRCGSIPLERLRKLNEDQADLPLKKGDWICDKCNFLNFAKNSTCLQCKEKPLNRQLNQGEWECESCNYINFRKNTLCLKCDHRRPKALNTRNVSAVPAAENGNYSFSKPKFSSGKVGNNASRKNDGCMWRFGENEGEDDSGLVDFPIARSSGSAERQERRKVEMLERRKNMENAIDKEEDLILRSDNIERRFEFVESTDDEDIIEWFGHKPESIK 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6960139 6966410 - ClG42_01g0065100.10 Clacu01g0651 240035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0651 561 Coils Coil 500 527 - -
Clacu01g0651 561 SUPERFAMILY Ran binding protein zinc finger-like 323 352 IPR036443 -
Clacu01g0651 561 ProSitePatterns Zinc finger RanBP2-type signature. 330 349 IPR001876 -
Clacu01g0651 561 ProSitePatterns Zinc finger RanBP2-type signature. 374 393 IPR001876 -
Clacu01g0651 561 ProSiteProfiles Zinc finger RanBP2 type profile. 370 393 IPR001876 -
Clacu01g0651 561 SUPERFAMILY Ran binding protein zinc finger-like 364 396 IPR036443 -
Clacu01g0651 561 Gene3D - 322 353 - -
Clacu01g0651 561 Gene3D - 398 433 - -
Clacu01g0651 561 Gene3D - 361 397 - -
Clacu01g0651 561 PANTHER ZINC FINGER PROTEIN 365 436 - GO:0003729(PANTHER)|GO:0005737(PANTHER)
Clacu01g0651 561 SUPERFAMILY Ran binding protein zinc finger-like 399 432 IPR036443 -
Clacu01g0651 561 ProSiteProfiles Zinc finger RanBP2 type profile. 326 355 IPR001876 -
Clacu01g0651 561 ProSiteProfiles Zinc finger RanBP2 type profile. 403 432 IPR001876 -
Clacu01g0651 561 SMART zf_4 405 429 IPR001876 -
Clacu01g0651 561 SMART zf_4 328 352 IPR001876 -
Clacu01g0651 561 SMART zf_4 372 396 IPR001876 -
Clacu01g0651 561 Pfam Zn-finger in Ran binding protein and others 370 394 IPR001876 -
Clacu01g0651 561 Pfam Zn-finger in Ran binding protein and others 405 427 IPR001876 -
Clacu01g0651 561 Pfam Zn-finger in Ran binding protein and others 328 351 IPR001876 -
Clacu01g0651 561 ProSitePatterns Zinc finger RanBP2-type signature. 407 426 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0651 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0651 Clacu-Chr1:6960139 Clacu06g1530 Clacu-Chr6:26221035 2.20E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29