Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0658 ATGTCTTCCCCATCCTTTCCTCCTTCCATGGAGCCTCCCGCCCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCTCCAACTCTGACGGCTCCACTTCCCCCATCGGCCCCCTCGCCCTTCTCTTGGGCCGCGCCACTGGCCGCCGTGGAACTTCTATGCTGGTTCGGGAGACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTGGTAGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCACTCCGCCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTGTTGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGACGGCTAGGGATATGGAGACGCAGCAACAGCAGCAGTCTGATGGATATGTAACTAATGAAAGCGATGAAGAAGATGGTAGCCCCAGGAACATGTCCGGTGTTGTGAAAAGATGCGAGTCAGTAAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTTGTGGCTGGTGGTAACATCCTCATGCAGAATGCCCCATCTTTATACTGGCTGGCTGTCGTATTCCTGGCATTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAGATATCGGTATCAAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCGGTAGAAACTAGCAGTAGATACTTGACGACTGAGCGTGTTCTATCACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATATGAGGATGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAATATTCTAAAAAATTCTGAACCTGTGTAA 1068 49.06 MSSPSFPPSMEPPAQQIPLLPSRQPSNSDGSTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSADEKPNTPIRLWIVVYAAQCLVHAVLVWFEFRRRNARTARDMETQQQQQSDGYVTNESDEEDGSPRNMSGVVKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPRYRYQVSNEPSPGDGLMVPVETSSRYLTTERVLSREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNSEPV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7019727 7023544 - ClG42_01g0065800.10 Clacu01g0658 240042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0658 355 Pfam Ring finger domain 303 345 IPR001841 -
Clacu01g0658 355 SUPERFAMILY RING/U-box 291 350 - -
Clacu01g0658 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Clacu01g0658 355 SMART ring_2 304 344 IPR001841 -
Clacu01g0658 355 MobiDBLite consensus disorder prediction 1 32 - -
Clacu01g0658 355 FunFam E3 ubiquitin protein ligase RIE1 284 352 - -
Clacu01g0658 355 PANTHER TARGET OF ERK KINASE MPK-1 43 349 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu01g0658 355 CDD RING-H2_PA-TM-RING 303 345 - -
Clacu01g0658 355 MobiDBLite consensus disorder prediction 138 166 - -
Clacu01g0658 355 MobiDBLite consensus disorder prediction 1 19 - -
Clacu01g0658 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 350 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0658 Clacu-Chr1:7019727 Clacu05g0207 Clacu-Chr5:1838311 2.30E-88 dispersed
Clacu01g0658 Clacu-Chr1:7019727 Clacu07g1515 Clacu-Chr7:29760181 6.20E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0658 - - - 0.0