Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0661 ATGGGAAAGACGATCGAGATTTACGGGTTCCGGCCAGAGGTGACCGTCGACGAGGTGAAGGAATTTCTCGAGAATCACACCGGAGATGGAACTGTATCGACGGTGAGGATTTCGAAACCCAAAGACGAAAAAGCTCGGTTCACATTCGCAACGGTCCGGTTCGGTAGCAAATTGGCGGCCGAGTACATAGTGGCGAAGGCGACAGCGGCGGAGAAGCAGTTGTGGTTCGGAGGTTGGTATCTGAAGGCCAGAGACGTGGAGAGGTCGGTGGCGCCGGCGAGAGGCGGCGGTGAAATGGAGAGAATGGAAGAGGTGAAGGGGCACCTAGGGAGCCTAATTTCGGAGGAAACAATGAGGGTAATTTGGGAAGGACAAAATTGGAGTGTGGAATTTGGAAATGGAGTTAGGAAATTATGCTTTTATTTGAGTTATGAACTTCATGACTACAAAATGGAGCTTTGTTTTCAGAATATTTTGAGTGTTGAGCTTCGTTGCCCTCTTAATCAACCTTCCAAGTTTTTTCTCATTCAGTTGCAAGGTGCTCCACGGATTTTCAAGAAGATACCATCGTCTTCTTCCTCTCGATTCTATTCCAAGGAATCCATTGGTTTCCGTTGGATGAGGGATGTCGATTTCACTCCATCTTCTTGCATTGGACAATCTTTTGCTATATGCTTGCAACTTTCTCCTGGACATCACCTTCCTCCTTTCTTCCAAACATTGGTTGGCTACAAAGAAACTTATGCTCCATTCATTCTCCAGACAGGTTCATCTTTCTCTTCCATTTCAAATCTGGTTCCTATCATTACGCCACCTCACGACTTTGATATCCCTTATGAAATTTTGTTCAAAATCAATAACCTAGTTCAACATGGTTATCTTCCTGGACCAACACTAGATGATGAATTCTTCCGATTGGTCGATCCAAGTAGATTTCGTCGTGACTTTGTCGAACATGCCCTAGAAAAACTATTTAATTTGAAGGAATGTTGCTATGAACCACAAAAATGGCTCAAGCACCAATATCTGTCATTTTATACTTCTAATCAACTTCCATGGAAAACTAATATTTCTTTGGATGATGGCCTGGTGTACGTGCATAGAGTTCAAATTACGCCATCTAAGGTGTACTTCCGTGGTCCGGAGGTCAATCTTTCTAACAGAGTAGTTCGTCGTTTTATTGATGATATAGATAATTTTCTCCGTGTGTCTTTAGTTGATGAAGAATTGGATAAACTTCATTCCATTGATCTATCTCTGCGTTCATCATCTGCTGAAAATAGTGAAAAGACTAAAGTTTATGATAGAATACTATCTATGTTAAGAAATGGTATAGTCATTGGTGATAAGAAGTTTGAGTTTCTGGCTTTCTCAGCTAGTCAATTAAGGGAAAATTCTTTTTGGATGTTTGCTTCGAGGGAAGGGCTTAGTGCAGTAGATATCAGAGAGTGGATGGGTGACTTTAGTCAGATAAGGAATGTGGCAAAATACGCTGCTCGACTCGGTCAATCTTTTGGCTCATCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAAGTTATTCCTGATGTAGAAGTTGAAAATAAAGAAAATATGTATTGTTTCTCCGATGGGATTGGAAAAATATCGAAAACGTTAGCTGAGAAGGTTGCTGAAAAATGTGGCTTGGTTAATCATACACCATCTGCCTTCCAGATTCGATATGCTGGATACAAAGGTGTTGTTGCTATCGATCCAACGTCAAAAAAGAAATTGTCATTACGAAAGAGTATGTTGAAGTATATGTCGCTCGATACGCAACTTGATGTTTTGTTATGGAGCAAGTATCAACCCTGTTTTCTTAACCGCCAGGTGATCAACCTTCTGTCAACTCTTGGAATTAAGGACGGTGTTTTTGTGAAAAAACAAAAGGAGGCTATAGATCAACTAGATTCTATTTTAGAAGATCCATCAAGAGCATTAGAAGTGTTGGAGTTGATGTCACCGGGAGAAATGACTTGTATTCTAAAGGAATTGCTTTTGTTTTACAAGCCAAACAAAGAGCCTTTTCTAAATATGATGCTACGAACATTTCGAGCAGATAAATTGTTAGATTTGAGGACTAAATCAAGAATATTTGTTCCTAAGGGAAGGACCATGATGGGTTGCCTGGATGAAACCCGAACACTAGAATATGGGCAGGTGTTTGTCCATTGCTCTGTTCCTGGAAGATCAAGCGAAAATAATTTTGTAGTTAAGGGTAAAGTGGTTGTTGCTAAAAATCCATGTTTACATCCGGGGGACGTGCGCGTGCTCGATGCCGTTGATGTGAAAGCTCTACATCATATGGTGGATTGTGTTGTTTTTCCACAAAAAGGGAAAAGACCTCATACAAATGAATGTTCTGGGAGTGATTTGGATGGTGACTTGTACTTTGTTTGTTGGGATCCGAAGCTGACTTGTATTAAACCAGTTAAACCTACGAGCTACAAGCCTGCACCAACTATGCAGTTGGACCATGATGTCACAATCGAGGAGGTGCAGGAATATTTTGCCAATTACATGGTGAATGATAGTCTTGGAGCCATTGCAAATGCTCACACTGTCTTTGCAGATAAGAATCCTAAGAAGGCAATGAGTGTTGAATGTATTAAACTTGCAAAATTGTTCTCCATTGCTGTTGACTTCCCGAAGACTGGCGTGCCAGCAAACTTGCCACGCAATCTTCGTGTCCATAAGTATCCAGATTTCATGGAGAAGCCTAATAAACAGACTTATGTATCAAATGGTGTTCTCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCTGATGTCAACACCCTTGAAAGCTTCACTAGGGAAGTTGCTACCAAGTGCTACGATCCAGACATGGAAGTAGATGGTTTTGAAAAGTATTTGAGAGAAGCTTCCGATTACAAAACCATATATGACTTCAAATTGGGGAACCTTATGGATTATTATGGTATCAAAACAGAACCTGAATTAGTAAGTGGAAATATCTTGAGAATGGGAAAGTCTTTTGATAAAAGGAATGACTTGGAACAAATTAATTGTGCCATGAAATCACTAAGAAAAGAGGTCAGGGCTTGGTTCAATGAGAAGGGAAGTAAGTCTACATATGACAACAACAAAGACGAAGATGAAGAATACGCAAAGGCATCTGCGTGGTACCATGTCACGTATCACCCAGATTATTGGGGTCGTTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCCTGGTGTGTTGGTGACAAGCTTATTCAAATCAAAAGAGAGAAGACGTCATTGATGAATTCTTCACCAATGTCATCATTGATACACAAATTTGGCGAGCTGAGTTTATACTAA 3363 40.44 MGKTIEIYGFRPEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAAEYIVAKATAAEKQLWFGGWYLKARDVERSVAPARGGGEMERMEEVKGHLGSLISEETMRVIWEGQNWSVEFGNGVRKLCFYLSYELHDYKMELCFQNILSVELRCPLNQPSKFFLIQLQGAPRIFKKIPSSSSSRFYSKESIGFRWMRDVDFTPSSCIGQSFAICLQLSPGHHLPPFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPHDFDIPYEILFKINNLVQHGYLPGPTLDDEFFRLVDPSRFRRDFVEHALEKLFNLKECCYEPQKWLKHQYLSFYTSNQLPWKTNISLDDGLVYVHRVQITPSKVYFRGPEVNLSNRVVRRFIDDIDNFLRVSLVDEELDKLHSIDLSLRSSSAENSEKTKVYDRILSMLRNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSAVDIREWMGDFSQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVENKENMYCFSDGIGKISKTLAEKVAEKCGLVNHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDGVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTCILKELLLFYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGRSSENNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHTNECSGSDLDGDLYFVCWDPKLTCIKPVKPTSYKPAPTMQLDHDVTIEEVQEYFANYMVNDSLGAIANAHTVFADKNPKKAMSVECIKLAKLFSIAVDFPKTGVPANLPRNLRVHKYPDFMEKPNKQTYVSNGVLGKLFRGVKDVSSDVNTLESFTREVATKCYDPDMEVDGFEKYLREASDYKTIYDFKLGNLMDYYGIKTEPELVSGNILRMGKSFDKRNDLEQINCAMKSLRKEVRAWFNEKGSKSTYDNNKDEDEEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVGDKLIQIKREKTSLMNSSPMSSLIHKFGELSLY 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7053886 7058178 + ClG42_01g0066100.10 Clacu01g0661 240045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0661 1120 Coils Coil 1015 1035 - -
Clacu01g0661 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 4 1099 IPR007855 GO:0003968(InterPro)|GO:0003968(PANTHER)|GO:0030422(PANTHER)|GO:0031380(PANTHER)
Clacu01g0661 1120 Pfam RNA dependent RNA polymerase 371 933 IPR007855 GO:0003968(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0661 K11699 - - csv:101205704 1921.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0646 Clacu-Chr1:6916605 Clacu01g0661 Clacu-Chr1:7053886 0.00E+00 dispersed
Clacu01g0661 Clacu-Chr1:7053886 Clacu07g0553 Clacu-Chr7:7430777 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g507 . . . . . . . . . . . Cma04g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01742 . . . . . . . Cmo15g00938 . . . Car15g00840 Cpe13g00418 . Bhi12g00954 . . . Hepe02g2614 . Lcy10g1379 Cla01g00645 Cam01g0673 Cec01g0664 Cco01g0691 Clacu01g0661 Cmu01g0634 Cre09g1871 Lsi09g00694 . Chy09g00814 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003921 0 1 0 0 0 2 2 1 2 1 2 2 2 2 3 2 2 0 2 2 2 2 1 2 2 2 1 4 1 0 45