Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0683 ATGTTGAAACCTTCAACTTCTTCTTCTTCTGGTGGTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCCAATTCTGACCATGCAATCACCAGCAAAAGAAAAAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCACCGGCGCCGCCACAAAGTGCCTTGGAAGTTACTAAAGAGAGCGGAGACGGCGGAGAGTGTGAAGAAAAAGGTGTTTGTTTGTCCGGAGCCGACGTGTCTTCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGGAGAAAGCATAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAGCACCAAGACACTTGCAATCTCCGCCAGATGAGGTCCGATCAGTTGCAACCAGTGGTGCCGCCGTTACCACCACCGCTGTTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCATAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCGGATCGAAACATCAACATCAATTTACCCGATCACCACGATCTCGAACTTCATCTCTCTTCTCCGAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCCGAATGACGAGTGTCAACTCGAGCTGGCGATAGCGGAGAAGGCTTACGCAGACGAAGCAAGACGAGAGGCAAAACGACAGATCGAAATCGCCGAAGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACTATTATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTTCACATGAGTTCGGCCGCTCCTGAAGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA 1164 48.71 MLKPSTSSSSGGLPLPPPLPPPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRQMRSDQLQPVVPPLPPPLLLQPYSRSVSYTGASTSNDHSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDECQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7468551 7470336 + ClG42_01g0068300.10 Clacu01g0683 240067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0683 387 FunFam protein indeterminate-domain 12-like 39 109 - -
Clacu01g0683 387 SMART c2h2final6 103 133 IPR013087 -
Clacu01g0683 387 SMART c2h2final6 60 82 IPR013087 -
Clacu01g0683 387 SMART c2h2final6 139 166 IPR013087 -
Clacu01g0683 387 Coils Coil 302 343 - -
Clacu01g0683 387 Gene3D Classic Zinc Finger 38 106 - -
Clacu01g0683 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Clacu01g0683 387 MobiDBLite consensus disorder prediction 1 46 - -
Clacu01g0683 387 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 188 - -
Clacu01g0683 387 Gene3D Classic Zinc Finger 124 199 - -
Clacu01g0683 387 SUPERFAMILY beta-beta-alpha zinc fingers 59 159 IPR036236 -
Clacu01g0683 387 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Clacu01g0683 387 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 341 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu01g0683 387 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Clacu01g0683 387 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 138 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0683 Clacu-Chr1:7468551 Clacu04g1340 Clacu-Chr4:27270805 8.30E-92 dispersed
Clacu01g0683 Clacu-Chr1:7468551 Clacu01g2001 Clacu-Chr1:31947302 4.40E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46981 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0683 K25871 - csv:101210468 674.47