Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0700 ATGAAGTTCTTTTCCGCTGCAATTTTGTTGCTCCTCCTGCTTCTTGCCACTGGGATGGGGCCCATGGTGACAGACGCAAGGACATGTGAATCTCCGAGCCGACACTTCAAGGGGCTGTGCTTCAGTAAGAACAACTGTGGCCATGTCTGCAAAACGGAAGGCTTCCACGGCGGCCATTGCAGGGGCTTCCGCCGCCGGTGCTTCTGCACAAAGCACTGCGTTTGA 225 55.56 MKFFSAAILLLLLLLATGMGPMVTDARTCESPSRHFKGLCFSKNNCGHVCKTEGFHGGHCRGFRRRCFCTKHCV 74
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7683523 7683872 + ClG42_01g0070000.10 Clacu01g0700 240084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0700 74 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952(InterPro)
Clacu01g0700 74 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952(InterPro)
Clacu01g0700 74 PRINTS Purothionin signature 58 72 IPR008176 GO:0006952(InterPro)
Clacu01g0700 74 SUPERFAMILY Scorpion toxin-like 27 73 IPR036574 -
Clacu01g0700 74 CDD Knot1 38 70 IPR003614 GO:0006952(InterPro)
Clacu01g0700 74 SMART gth_4 28 73 IPR003614 GO:0006952(InterPro)
Clacu01g0700 74 Gene3D - 27 73 IPR036574 -
Clacu01g0700 74 Pfam Gamma-thionin family 27 73 - -
Clacu01g0700 74 PANTHER DEFENSIN-LIKE PROTEIN 1 3 73 - GO:0005739(PANTHER)|GO:0006952(PANTHER)|GO:0009505(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0700 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0700 Clacu-Chr1:7683523 Clacu02g0015 Clacu-Chr2:208805 1.60E-12 dispersed
Clacu01g0699 Clacu-Chr1:7678637 Clacu01g0700 Clacu-Chr1:7683523 4.30E-29 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00681 Cam01g0714 Cec01g0705 Cco01g0735 Clacu01g0700 . . . . . Cme09g01259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001561 0 2 0 1 1 3 0 3 3 1 3 3 11 3 3 4 1 1 3 0 1 2 2 1 2 1 4 3 4 1 67