Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0735 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTGCTAATCTCACTAATGAGTCTGTTGGATTCGTTTCTACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCGACTTCAATGTCTAACTTATTTACTTCAACACTTTTGAACCATCATACCGAATCGCAAAACTCGGGATTCTGCACCACTTTTAATGAACAAAACAGCATAGTTGCTTCTAATACGACTGTAGTTGATGGGGAGGGTCTGAATTCTTTGAGATCTAATGGTGATACTAGAACGCTGGGTATGGATTGGAATCAACAAAATCCATGGATGAAAGGAATTTTCTCAGGAAATGTTCCTGGAATATTTCCAGCTAATTTGTCTCAACTTCCAGCTGATTCGGCATTCATCGAACGTGCAGCAAGGTTCTCCTGCTTCAATAGCGGAGTTTTTGGGGCTCCGCCTACTGGTCCATTTGGCATTTCAGACTCTATAGGCATTCATTCTGGGAGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTTTCTTTACCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGAAAGATAGCGAAATGTCCCAAGACAGGACTAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAGGCGGGGTTTAGTGGTGGTCAAGACGAGCGGGGCACGTTGGGAGGTGCCATCACAGAACCATCTACTGAAGGACTGTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCACAACAAATCAATGAAACTGCAAAGAATGGAGCATTCAATCAGCAGAAGGGAGATCAAAACCCAAGTTCTACTACTAATAAGCCCGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCACGTTAGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACGGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCGCAAAAGAAATCATTCAATCAAAGGCTGGTCCATCTTTGTTCGGTTTTCCTCCTGATCTGCCTGTGCCTTACCTCCCGCAGCATCGGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGTTCTCCGGACCTGCTACGAAGAACAATTAATTCTCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTACCAAACCGATGGGAGAATGAACTCCACAATGTTGTTCCGATGAACTTTGATGTGACCGCACCTTCCAGTGGCCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA 1605 44.49 MNGKDEFEVENRTSDPMSISSGWQFAAAANLTNESVGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTSTLLNHHTESQNSGFCTTFNEQNSIVASNTTVVDGEGLNSLRSNGDTRTLGMDWNQQNPWMKGIFSGNVPGIFPANLSQLPADSAFIERAARFSCFNSGVFGAPPTGPFGISDSIGIHSGSGFGRQEVISRNGASKDVSLPMELEAKEKSPSKNEKDSEMSQDRTKQGCVGESGNDSDEAGFSGGQDERGTLGGAITEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGDQNPSSTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKEIIQSKAGPSLFGFPPDLPVPYLPQHRSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVTAPSSGQDVDGSTPQCNTRAEL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7927227 7929801 - ClG42_01g0073500.10 Clacu01g0735 240119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0735 534 MobiDBLite consensus disorder prediction 302 329 - -
Clacu01g0735 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983(InterPro)
Clacu01g0735 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 145 451 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu01g0735 534 SMART finulus 354 404 IPR011598 GO:0046983(InterPro)
Clacu01g0735 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983(InterPro)
Clacu01g0735 534 CDD bHLH_AtBPE_like 338 423 - -
Clacu01g0735 534 MobiDBLite consensus disorder prediction 200 275 - -
Clacu01g0735 534 Gene3D - 345 419 IPR036638 GO:0046983(InterPro)
Clacu01g0735 534 MobiDBLite consensus disorder prediction 302 335 - -
Clacu01g0735 534 MobiDBLite consensus disorder prediction 208 230 - -
Clacu01g0735 534 FunFam Basic helix-loop-helix transcription factor 345 417 - -
Clacu01g0735 534 MobiDBLite consensus disorder prediction 513 534 - -
Clacu01g0735 534 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0735 Clacu-Chr1:7927227 Clacu05g2534 Clacu-Chr5:33423764 5.10E-108 dispersed
Clacu01g0735 Clacu-Chr1:7927227 Clacu02g0522 Clacu-Chr2:4882399 3.70E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46982 PF00010 HLH 6.60E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0735 - - - 0.0