Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0751 ATGGTTGTTGCTCTTGAAACCACCCGATTCCATGTTCTTGCTGTCGATGATAGCTTCATCGATAGGAAGTTGATTGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCAGTTGATTCCGGTACGAAGGCCTTGGAATTTCTTGGTCTTGTTGAAGATCATGATCACGATGAAGAAACAGACTCCAAAATCGCTCCCTCAAATCATCATCATGAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGTTACGAACTCCTTAGGAAGATCAAGGAATCGAAATCTCTCAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCCAGGAATTGA 474 41.14 MVVALETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHDEETDSKIAPSNHHHEEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSARN 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8107677 8108412 + ClG42_01g0075100.10 Clacu01g0751 240135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0751 157 ProSiteProfiles Response regulatory domain profile. 11 150 IPR001789 GO:0000160(InterPro)
Clacu01g0751 157 Pfam Response regulator receiver domain 12 143 IPR001789 GO:0000160(InterPro)
Clacu01g0751 157 Gene3D - 11 157 - -
Clacu01g0751 157 SMART REC_2 10 146 IPR001789 GO:0000160(InterPro)
Clacu01g0751 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 152 IPR045279 GO:0009736(InterPro)
Clacu01g0751 157 SUPERFAMILY CheY-like 9 148 IPR011006 -
Clacu01g0751 157 CDD REC_typeA_ARR 12 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0751 Clacu-Chr1:8107677 Clacu05g2882 Clacu-Chr5:35979440 1.70E-51 dispersed
Clacu01g0751 Clacu-Chr1:8107677 Clacu05g2695 Clacu-Chr5:34526605 3.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46984 PF00072 Response_reg 1.40E-20 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0751 K14492 - csv:101210839 278.1