Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0760 ATGAAGCTGATTGATTGTCTGCTGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAATATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTGCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCGAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAACTGCCTTCCAATGA 1392 46.48 MKLIDCLLTPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFASSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQTAFQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8237551 8240464 + ClG42_01g0076000.10 Clacu01g0760 240144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0760 463 SMART iq_5 117 139 IPR000048 GO:0005515(InterPro)
Clacu01g0760 463 Gene3D - 119 168 - -
Clacu01g0760 463 PANTHER IQ-DOMAIN 5-RELATED 18 396 - -
Clacu01g0760 463 ProSiteProfiles IQ motif profile. 118 146 - -
Clacu01g0760 463 ProSiteProfiles IQ motif profile. 142 169 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 292 353 - -
Clacu01g0760 463 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515(InterPro)
Clacu01g0760 463 MobiDBLite consensus disorder prediction 413 463 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 296 316 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 435 463 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 368 394 - -
Clacu01g0760 463 Pfam Protein of unknown function (DUF4005) 344 423 IPR025064 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0760 Clacu-Chr1:8237551 Clacu04g0929 Clacu-Chr4:23563185 3.20E-21 dispersed
Clacu01g0760 Clacu-Chr1:8237551 Clacu09g2069 Clacu-Chr9:35494288 7.70E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0760 - - - 0.0