Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0760 ATGAAGCTGATTGATTGTCTGCTGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAATATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTGCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCGAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAACTGCCTTCCAATGA 1392 46.48 MKLIDCLLTPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFASSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQTAFQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8237551 8240464 + ClG42_01g0076000.10 Clacu01g0760 240144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0760 463 SMART iq_5 117 139 IPR000048 GO:0005515(InterPro)
Clacu01g0760 463 Gene3D - 119 168 - -
Clacu01g0760 463 PANTHER IQ-DOMAIN 5-RELATED 18 396 - -
Clacu01g0760 463 ProSiteProfiles IQ motif profile. 118 146 - -
Clacu01g0760 463 ProSiteProfiles IQ motif profile. 142 169 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 292 353 - -
Clacu01g0760 463 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515(InterPro)
Clacu01g0760 463 MobiDBLite consensus disorder prediction 413 463 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 296 316 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 435 463 - -
Clacu01g0760 463 MobiDBLite consensus disorder prediction 368 394 - -
Clacu01g0760 463 Pfam Protein of unknown function (DUF4005) 344 423 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0760 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0760 Clacu-Chr1:8237551 Clacu04g0929 Clacu-Chr4:23563185 3.20E-21 dispersed
Clacu01g0760 Clacu-Chr1:8237551 Clacu09g2069 Clacu-Chr9:35494288 7.70E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g2069 . 1 479 IQD Protein Family AT3G52290 53.8 1.4e-103 373.6
Clacu05g2280 . 1766 1975 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Clacu03g1192 . 36 443 IQD Protein Family AT3G22190 57.8 3.2e-97 352.4
Clacu05g1958 . 1 438 IQD Protein Family AT2G26180 61.6 3.9e-119 425.2
Clacu01g2430 . 25 298 IQD Protein Family AT2G33990 52.5 2.5e-63 239.2
Clacu07g0989 . 109 292 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Clacu01g2430 . 25 246 IQD Protein Family AT3G15050 50.9 1.9e-55 213.0
Clacu07g0989 . 112 285 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Clacu01g0760 . 111 463 IQD Protein Family AT5G13460 50.4 8.1e-75 278.1
Clacu06g0268 . 1 509 IQD Protein Family AT4G00820 51.4 7.4e-115 411.4
Clacu06g0268 . 1 509 IQD Protein Family AT1G01110 50.1 2.4e-110 396.4
Clacu09g0028 . 1 399 IQD Protein Family AT3G16490 50.5 1.2e-66 250.8
Clacu03g1648 . 1 391 IQD Protein Family AT3G16490 50.2 5.1e-65 245.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35