Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0774 ATGTGCTTATTGCCGTCCCTTAAGTATAAAACTGTTCTCTTAAGGATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCTCAGAATGAAGATATGATGGACATCAGGGAAACCGTGGACGATCCAGTTCAAAATGAACTTAAACCGAACGCTGCTGTCTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAACGCAATGTACCCTCCAATACATCAGTGCTCAAATGGCCACACACTGTGCTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCTACATGTAGGCATGAACTTGGCAATATTAGATGCCTTGCATTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCATAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCCGAATGTTCAGCCGTCGGTGATATACCCTATTTGGTGGCCCACCTGAAAGACGATCATAAAGTAGACATGCACAGTGGAAGTACATTCAACCATCGTTATGTAAAATCAAACCCACAAGAAGTTGAAAATGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGATGGCTCCAGTATACATCGCTTTTTTACGGTTCATGGGTGATGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGCTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTCTCTGGTGGGGACCGGAAGGAACTTAAGCTTAGAGTGACTGGTAGAATTTGGAAAGAACAGTGA 963 45.59 MCLLPSLKYKTVLLRMASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPVQNELKPNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSAVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8395480 8397380 + ClG42_01g0077400.10 Clacu01g0774 240158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0774 320 SUPERFAMILY TRAF domain-like 125 317 - -
Clacu01g0774 320 SUPERFAMILY RING/U-box 66 113 - -
Clacu01g0774 320 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Clacu01g0774 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 180 IPR013083 -
Clacu01g0774 320 FunFam E3 ubiquitin-protein ligase SINAT5-like 181 313 - -
Clacu01g0774 320 FunFam E3 ubiquitin-protein ligase SINAT5-like 30 123 - -
Clacu01g0774 320 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 181 313 IPR008974 GO:0005515(InterPro)
Clacu01g0774 320 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270(InterPro)
Clacu01g0774 320 CDD RING-HC_SIAHs 70 108 - -
Clacu01g0774 320 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 57 315 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Clacu01g0774 320 Pfam Sina, zinc finger 121 196 - -
Clacu01g0774 320 CDD Sina 186 314 - -
Clacu01g0774 320 FunFam E3 ubiquitin-protein ligase SINAT3 124 180 - -
Clacu01g0774 320 Pfam Sina, TRAF-like domain 216 313 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Clacu01g0774 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 123 IPR013083 -
Clacu01g0774 320 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 72 107 IPR049548 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0774 Clacu-Chr1:8395480 Clacu05g2878 Clacu-Chr5:35942165 5.90E-168 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0774 K04506 - csv:101220834 642.114