Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0776 ATGGATACGTTTTGCGAGAAGAGAAGAAGCCATGGGCAGAATCATGTTAATCTAGGATATTCATTTCATTCCTCATTTTGTAAACCTATTGCTCCATTCTTTCATGATTTGCGTGCACGTTATTTAAAGCTGGAGATGTCAACCCAGCAGCAAAATTCTGATTCGAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACGCAACGCTGGAATTGGAAGAAAGACCAACAGCTCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGATGAACAAGTCAATACTTTGATGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCAAAATTCTACCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACCCTTCGAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATCGGGCATGCATTTCGTAACAGCCGAGTAAGAAGAGATGGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACTTAGCTGTCCGAGATGTGGTGACCAGCGATCCCTATGTAATTCTCACGTTGGGTCATCAATCGGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAACGAGAGCCTAATGTTATCGATTCCCGAGCATATCCCTCCGCTAAAGCTGCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCCTATGAGAAATCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAGCTAGAATGCATTCCTCTTACACAATAG 1374 43.3 MDTFCEKRRSHGQNHVNLGYSFHSSFCKPIAPFFHDLRARYLKLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMSMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSQNSTDNSFSKRSSSCSQSSNPSSKNGSHDKRHYEKQATRHRIGHAFRNSRVRRDGDHKSFDKSSPAVSRQASAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILTLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8411758 8424429 + ClG42_01g0077600.10 Clacu01g0776 240160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0776 457 SUPERFAMILY ArfGap/RecO-like zinc finger 102 218 IPR037278 -
Clacu01g0776 457 Pfam Putative GTPase activating protein for Arf 103 218 IPR001164 GO:0005096(InterPro)
Clacu01g0776 457 Gene3D Arf GTPase activating protein 83 225 IPR038508 -
Clacu01g0776 457 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 299 457 - -
Clacu01g0776 457 Pfam C2 domain 302 390 IPR000008 -
Clacu01g0776 457 SMART C2_3c 302 397 IPR000008 -
Clacu01g0776 457 SMART arf_gap_3 102 225 IPR001164 GO:0005096(InterPro)
Clacu01g0776 457 CDD C2_ArfGAP 300 444 - -
Clacu01g0776 457 FunFam stromal membrane-associated protein 1 isoform X1 86 222 - -
Clacu01g0776 457 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 92 457 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Clacu01g0776 457 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 298 392 IPR035892 -
Clacu01g0776 457 CDD ArfGap 105 211 - -
Clacu01g0776 457 ProSiteProfiles C2 domain profile. 282 399 IPR000008 -
Clacu01g0776 457 PRINTS HIV Rev interacting protein signature 154 175 IPR001164 GO:0005096(InterPro)
Clacu01g0776 457 PRINTS HIV Rev interacting protein signature 114 133 IPR001164 GO:0005096(InterPro)
Clacu01g0776 457 PRINTS HIV Rev interacting protein signature 133 150 IPR001164 GO:0005096(InterPro)
Clacu01g0776 457 MobiDBLite consensus disorder prediction 222 245 - -
Clacu01g0776 457 MobiDBLite consensus disorder prediction 269 284 - -
Clacu01g0776 457 ProSiteProfiles ARF GTPase-activating proteins domain profile. 102 224 IPR001164 GO:0005096(InterPro)
Clacu01g0776 457 Gene3D C2 domain 300 454 IPR035892 -
Clacu01g0776 457 MobiDBLite consensus disorder prediction 222 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0776 Clacu-Chr1:8411758 Clacu05g2878 Clacu-Chr5:35942165 1.10E-140 dispersed
Clacu01g0776 Clacu-Chr1:8411758 Clacu01g2594 Clacu-Chr1:36212717 1.10E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0776 K12486 - csv:101215531 757.288