Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0780 ATGGCACTCTCTGATAAACCCTCTCGCCAGTCTCTGATCCCCAGCTTCCTCTACTCCTCCCCTTCTTCCACTCGAACCCTCCCTCTCAAGAAGATGCTTCAATCTTCACCCACTCTCGATGGCGTTTCCTCTCCTACTAAGAGCTTTGTTATTCCCGCCCCCACCGAGCCGTCTAAGAAGATCGAGTTGTACTCGCCAGCCTTCTACGCTGCTTGTACTTTTGGTGGAATTCTCAGCTGTGGTCTTACGCATATGGCTGTTACTCCTCTTGATTTGGTTAAATGCAATATGCAGATTGATCCTGCGAAATACAAAAGTATTTCGTCTGGTTTTGGAGTTCTGCTTAAGGAGCAGGGTGCGAGGGGTTTCTTCAGGGGTTGGGTGCCTACTCTCCTTGGATACAGTGCACAGGGTGCTTGCAAGTTTGGCTTTTACGAGTTCTTTAAGAAGTATTACTCTGATATTGCTGGACCTGAGTACGCAGCTAAGTACAAGACCTTGATCTACCTTGCGGGTTCTGCATCTGCTGAGGTTATTGCTGATGTTGCACTTTGCCCTTTCGAAGCAGTGAAGGTTCGGGTTCAAACTCAGCCTGGTTTTGCTAGAGGTCTATCAGATGGACTTCCCAAGTTTGTCAGATCTGAAGGAGCTCTTGGGTTGTACAAGGGTATAGTTCCACTCTGGGGACGCCAGATTCCATACACGATGATGAAGTTTGCATCCTTTGAGACAATAGTTGAGATGCTATATAAGTATGCCATTCCCACACCAAAGGACCAGTGCAGCAAATCTCTCCAGCTTGGTGTTAGTTTTGCTGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTATCTCATCCTGCTGATAATCTCGTGTCGTTCCTCAACAATGCCAAAGGAGCAACTGTTGGTGATGCTGTCAAGAAGCTCGGGTTATGGGGTCTCTTCACCCGTGGGCTACCCCTCCGTATTGTGATGATTGGAACTCTTACTGGTGCTCAGTGGGGTATCTATGATGCGTTCAAAGTATTTGTTGGACTGCCTACTACTGGTGGCCCTGCACCTGCTGCCCCTGCACCTGCTGCTGCTGAGCTCGCAAAGGCGTGA 1107 48.69 MALSDKPSRQSLIPSFLYSSPSSTRTLPLKKMLQSSPTLDGVSSPTKSFVIPAPTEPSKKIELYSPAFYAACTFGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGARGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMLYKYAIPTPKDQCSKSLQLGVSFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAPAPAAAELAKA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8442344 8445451 - ClG42_01g0078000.10 Clacu01g0780 240164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0780 368 FunFam Phosphate carrier protein, mitochondrial 67 345 - -
Clacu01g0780 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 248 IPR018108 -
Clacu01g0780 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 151 IPR018108 -
Clacu01g0780 368 Gene3D Mitochondrial carrier domain 69 345 IPR023395 -
Clacu01g0780 368 SUPERFAMILY Mitochondrial carrier 70 340 IPR023395 -
Clacu01g0780 368 Pfam Mitochondrial carrier protein 69 154 IPR018108 -
Clacu01g0780 368 Pfam Mitochondrial carrier protein 165 252 IPR018108 -
Clacu01g0780 368 ProSiteProfiles Solute carrier (Solcar) repeat profile. 265 344 IPR018108 -
Clacu01g0780 368 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 53 353 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0780 Clacu-Chr1:8442344 Clacu05g1421 Clacu-Chr5:16662489 3.70E-166 dispersed
Clacu01g0780 Clacu-Chr1:8442344 Clacu10g0165 Clacu-Chr10:1974042 4.00E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0780 K15102 - csv:101221771 677.552