Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0788 ATGTCTTCTTCTCTTTCATGGTTCTTCTTCTTTTCCCTCTCCTTTACGTTCTCCGGTACGGCCGCCTCGGTTTCCGATGATGCAATGTCGCTCCTCATGTTTAAGGGCTCGATTTCGCTCGGAGGCTCTGATGTTCTTCGTGGCTGGAATTTGTCTCTTTCTCACTGCCAGTGGTTTGGAGTTACTTGCGATGGTGTTAACGGTAGAGTTGTTGCGCTGAATATCAGTGGAAATGGTGGTGTTCTGGCGGCGGGTTCTTCACTGGTTGGGAAGTTGAATCCGGCGATTGGAAATCTTGTTGAGCTTCGCGTTTTGTCGCTTCCGAATAATTTGATGTACGGGGAGATTCCGGGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTAGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCAAATCAGATAAGTTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGGGTAAATTGATCGGCTCGACGCGATTAGAAGCAATTGATTTGTCGTACAATCAATTATCTGGTAGTATTCAAGTTGTTGATAATAGATGCGGTGCTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTAATAACATTCCGGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGTAATATATTAGAGGGGCAAATTCCGGCTGAGATCGGCCAAATTTCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGGGCTTGGTAATTGCCGGAAGTTGTCACAGATCGTTTTGACGAATTTGAACGATATCAATCCCGACTACGATAGTTTAAGAGGGGAATTCAACGCCTTCAATGGAGGTATTCCTTCTGAGTTGTTATTGCTTCCAAGTCTGCAAGTTTTATGGGCACCGAGAGGGAATTTTAATGGCGAATTGCCGATTAATTGGAGTTCTTCATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTACATCACTGGTACAATACCCGAATCGATTGGGAAATGTGCGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTTCAAGGTAACCTCCCCTCCCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGACAGTTTCTGTACGAACTTGATTCCACACGAACCAGCTCCCAGATTCTTAGATCAGGAAGACGATTGGAATTCTTACTTCAATTTTCCTGTTTGGGATTTCCCGAGATTAAATGATAATCTCATAATTTCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCAGTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCGCAAGTTCTCATACAAATTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTGGTCTCGAACTGTAACGATATGAAGGGTGTTTCTGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAAATGATAGAGTTTGAGGCAGCAAGCAATGAATTAGATAACTCGATTGGACCTCAAATTGGCGACTTGCAGATGCTTCTTCGTCTCGACTTGAGAGGGAATAGATTGTCTGGAGTTTTACCTGATCAGTTGGGAAACTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACTGGAGAGATTCCATCTCGACTTAGTCGATTGACTTCTCTCGTGAGTTTAGATCTTTCTCGGAACATGTTTACAGGAGTTATCCCTGAAAGCTTCTCATATGCTTCAAGACTTGAGATTCTGTTGCTTGATCATAATAGGTTAACTGGGGAAATACCAGCATCTTTCTCTGCCCTTTCACATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACACATTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTGCATCCATGCCCAGATTCATACTCCGACTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGCAAAGTGGAAGAGACGAAGAAAGTTTATGTCCATGATAATCGCTGTGGCTGCCTCCTCAAGTCTAATTTGCTTACTCATAATGATAGCTGTTATCATCATTGTTAAGAGAAGGCTAGGTAAACAAAATACGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAACGTGGTCCGAGCTACCGAAAATTTCAGCCTTCGTTACCTTATCGGTACCGGTGGCTTTGGATCAACGTACAAGGCTGAACTGCCCTCAGGTTTCCTTGTTGCTGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATTCAACAATTTGACGCAGAAATTCGAACTTTGGGAAGAATACGACACAAAAACCTTGTAACTCTTCTCGGGTATTATGTTGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGATACTTTCATCCACAAAAAATCTTGCAAACACGTAAAGCACTCAGTGATCCACAAGATCACTTTGGACATAGCGAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCTTGCTTGATGAAGACCACAACACCTACATATCAGATTTTGGGTTGGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTCGCACCTGAATATGCTACAACTTGCAGGGTCTCGGATAAGGCGGATGTTTATAGCTTTGGAGTTGTGCTACTAGAGTTGCTTTCTGGAAAAAGATCACTCGATCGATCCTTTTCCGACTTTGGGAACGGATTTAACATTGTTACATGGGCAAATATGCTGATCAAGGAAGGTCGTTTTTCCGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCTAAGGAACACTTACTTGGAATGTTAAAGCTCGCTTCCAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAACAGGTTGTCGAGACACTGAAACAGTTGTAA 3132 42.66 MSSSLSWFFFFSLSFTFSGTAASVSDDAMSLLMFKGSISLGGSDVLRGWNLSLSHCQWFGVTCDGVNGRVVALNISGNGGVLAAGSSLVGKLNPAIGNLVELRVLSLPNNLMYGEIPGSVGKLQSLEVLELQGNNFSGEIPNQISSLRSLRLLNLSDNSFSGSIPGKLIGSTRLEAIDLSYNQLSGSIQVVDNRCGALNHLRLSHNFLTNNIPAEIGQCWKLRTLLLDGNILEGQIPAEIGQISELRILDVSRNSLTDSIPKGLGNCRKLSQIVLTNLNDINPDYDSLRGEFNAFNGGIPSELLLLPSLQVLWAPRGNFNGELPINWSSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPSQLRVSCMAYFNVSQNKISGVLPRFEKDSFCTNLIPHEPAPRFLDQEDDWNSYFNFPVWDFPRLNDNLIISHDFSWNRFSGSLTSVKVGEELLANGRKFSYKLLLNSNQFNGSLPIDLVSNCNDMKGVSVNLSSNLVSGEISDAFFLHCRQMIEFEAASNELDNSIGPQIGDLQMLLRLDLRGNRLSGVLPDQLGNLQSLKWMLLGGNNLTGEIPSRLSRLTSLVSLDLSRNMFTGVIPESFSYASRLEILLLDHNRLTGEIPASFSALSHLTKLDVSFNNLSGHIPHLQHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVAKWKRRRKFMSMIIAVAASSSLICLLIMIAVIIIVKRRLGKQNTLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLDTFIHKKSCKHVKHSVIHKITLDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWANMLIKEGRFSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8536825 8539956 - ClG42_01g0078800.10 Clacu01g0788 240172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0788 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 1042 IPR050647 -
Clacu01g0788 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Clacu01g0788 1043 Gene3D Ribonuclease Inhibitor 26 142 IPR032675 -
Clacu01g0788 1043 Gene3D Ribonuclease Inhibitor 143 193 IPR032675 -
Clacu01g0788 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Clacu01g0788 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 443 686 - -
Clacu01g0788 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0788 1043 CDD STKc_IRAK 774 1043 - -
Clacu01g0788 1043 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515(InterPro)
Clacu01g0788 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515(InterPro)
Clacu01g0788 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515(InterPro)
Clacu01g0788 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 285 371 - -
Clacu01g0788 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 732 844 - -
Clacu01g0788 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524(InterPro)
Clacu01g0788 1043 SUPERFAMILY L domain-like 88 661 - -
Clacu01g0788 1043 Pfam Protein kinase domain 773 971 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0788 1043 Gene3D Phosphorylase Kinase; domain 1 730 844 - -
Clacu01g0788 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 190 - -
Clacu01g0788 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
Clacu01g0788 1043 SUPERFAMILY Protein kinase-like (PK-like) 746 1040 IPR011009 -
Clacu01g0788 1043 Gene3D Ribonuclease Inhibitor 194 283 IPR032675 -
Clacu01g0788 1043 Gene3D Ribonuclease Inhibitor 284 417 IPR032675 -
Clacu01g0788 1043 Gene3D Ribonuclease Inhibitor 422 688 IPR032675 -
Clacu01g0788 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 282 - -
Clacu01g0788 1043 SMART LRR_typ_2 593 616 IPR003591 -
Clacu01g0788 1043 SMART LRR_typ_2 243 267 IPR003591 -
Clacu01g0788 1043 SMART LRR_typ_2 641 667 IPR003591 -
Clacu01g0788 1043 SMART LRR_typ_2 545 568 IPR003591 -
Clacu01g0788 1043 SMART LRR_typ_2 123 146 IPR003591 -
Clacu01g0788 1043 SMART LRR_typ_2 147 171 IPR003591 -
Clacu01g0788 1043 SMART LRR_typ_2 195 219 IPR003591 -
Clacu01g0788 1043 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Clacu01g0788 1043 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Clacu01g0788 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Clacu01g0788 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0788 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0788 Clacu-Chr1:8536825 Clacu05g2516 Clacu-Chr5:33270190 8.30E-62 dispersed
Clacu01g0788 Clacu-Chr1:8536825 Clacu07g1635 Clacu-Chr7:30916047 6.70E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73236 PF00069 Pkinase 5.10E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0788 - - - 0.0