Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0815 ATGTTTCCAATGGCTCCATCTATCAACTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGGTGTTGCCGCGCCACCGTCTCTCTCTGTTCAGCGCCGCCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTCTCTCCGGTCAGCGCCGTCGCCGCCCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTTGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCTGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACTATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCGAAGAAATTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1851 45.54 MFPMAPSINFHSHLLAFSLSLLDGVAAPPSLSVQRRRLSPFSAASSLRSAPSPLSGQRRRRPPFSAVAALLPVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYYNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 616
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 8911995 8922212 + ClG42_01g0081500.10 Clacu01g0815 240199

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0815 616 CDD S1_RNAPII_Rpb7 159 234 - -
Clacu01g0815 616 Gene3D - 403 491 - -
Clacu01g0815 616 FunFam V-type proton ATPase subunit C 403 491 - -
Clacu01g0815 616 FunFam DNA-directed RNA polymerase II subunit RPB7 159 244 - -
Clacu01g0815 616 FunFam DNA-directed RNA polymerase II subunit RPB7 79 158 - -
Clacu01g0815 616 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 79 156 IPR036898 -
Clacu01g0815 616 CDD RNAP_II_Rpb7_N 80 159 - -
Clacu01g0815 616 CDD V-ATPase_C 245 613 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 SUPERFAMILY Nucleic acid-binding proteins 156 238 IPR012340 -
Clacu01g0815 616 Pfam V-ATPase subunit C 245 609 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 Gene3D - 78 158 IPR036898 -
Clacu01g0815 616 Pfam S1 RNA binding domain 157 234 IPR003029 GO:0003676(InterPro)
Clacu01g0815 616 Gene3D - 159 245 IPR012340 -
Clacu01g0815 616 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 86 142 IPR005576 GO:0006351(InterPro)
Clacu01g0815 616 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 241 615 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 Gene3D Vacuolar atp synthase subunit c; domain 1 246 574 - -
Clacu01g0815 616 SUPERFAMILY Vacuolar ATP synthase subunit C 241 615 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 Gene3D - 281 552 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0815 K02148 - - csv:101221574 709.523
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0815 Clacu-Chr1:8911995 Clacu05g0529 Clacu-Chr5:4387424 5.50E-13 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu09g0169 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Clacu02g0417 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Clacu02g0417 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.8e-270 927.5
Clacu02g0417 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.3e-266 912.5
Clacu01g0815 . 241 616 Primary Pumps ATPases(2) AT1G12840 83.2 1.2e-180 629.4
Clacu09g2243 . 1021 1281 Primary Pumps ATPases(2) AT3G58730 82.4 7.8e-118 420.2
Clacu05g1557 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 2.7e-90 328.6
Clacu05g1557 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 8.7e-76 280.4
Clacu05g1557 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.0 1.6e-64 242.7
Clacu03g1772 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Clacu10g2006 . 62 169 Primary Pumps ATPases(2) AT3G01390 80.6 3.7e-37 151.0
Clacu10g1624 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-206 715.3
Clacu02g2138 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.8 0.0e+00 1347.0
Clacu08g1622 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.2 4.1e-298 1020.8
Clacu02g0509 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.1e-292 1002.7
Clacu02g0509 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.8
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.5 0.0e+00 1195.3
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 8.2e-299 1023.1
Clacu02g0509 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.7
Clacu08g1622 . 1 807 Primary Pumps ATPases(2) AT4G39080 74.2 0.0e+00 1192.6
Clacu02g2138 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 9.1e-298 1019.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Clacu11g1754 . 109 230 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Clacu08g1611 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1612 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Clacu08g1611 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1612 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu11g1754 . 136 273 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Clacu08g1611 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu08g1612 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Clacu11g1754 . 110 273 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Clacu08g1611 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu08g1612 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu11g1754 . 111 273 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Clacu05g1865 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 6.1e-73 270.8
Clacu08g1455 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Clacu05g1865 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.4e-70 262.3
Clacu08g1455 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28710 95.0 2.4e-194 674.9
Clacu10g1482 . 120 461 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Clacu03g0182 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.8
Clacu08g1822 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.2 0.0e+00 1628.2
Clacu03g0182 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36