Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0815 ATGTTTCCAATGGCTCCATCTATCAACTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTTGACGGTGTTGCCGCGCCACCGTCTCTCTCTGTTCAGCGCCGCCGTCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTCTCTCCGGTCAGCGCCGTCGCCGCCCTCCGTTCAGCGCCGTCGCCGCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTTGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCTGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACTATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCGAAGAAATTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1851 45.54 MFPMAPSINFHSHLLAFSLSLLDGVAAPPSLSVQRRRLSPFSAASSLRSAPSPLSGQRRRRPPFSAVAALLPVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYYNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8911995 8922212 + ClG42_01g0081500.10 Clacu01g0815 240199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0815 616 CDD S1_RNAPII_Rpb7 159 234 - -
Clacu01g0815 616 Gene3D - 403 491 - -
Clacu01g0815 616 FunFam V-type proton ATPase subunit C 403 491 - -
Clacu01g0815 616 FunFam DNA-directed RNA polymerase II subunit RPB7 159 244 - -
Clacu01g0815 616 FunFam DNA-directed RNA polymerase II subunit RPB7 79 158 - -
Clacu01g0815 616 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 79 156 IPR036898 -
Clacu01g0815 616 CDD RNAP_II_Rpb7_N 80 159 - -
Clacu01g0815 616 CDD V-ATPase_C 245 613 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 SUPERFAMILY Nucleic acid-binding proteins 156 238 IPR012340 -
Clacu01g0815 616 Pfam V-ATPase subunit C 245 609 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 Gene3D - 78 158 IPR036898 -
Clacu01g0815 616 Pfam S1 RNA binding domain 157 234 IPR003029 GO:0003676(InterPro)
Clacu01g0815 616 Gene3D - 159 245 IPR012340 -
Clacu01g0815 616 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 86 142 IPR005576 GO:0006351(InterPro)
Clacu01g0815 616 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 241 615 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 Gene3D Vacuolar atp synthase subunit c; domain 1 246 574 - -
Clacu01g0815 616 SUPERFAMILY Vacuolar ATP synthase subunit C 241 615 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Clacu01g0815 616 Gene3D - 281 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0815 Clacu-Chr1:8911995 Clacu05g0529 Clacu-Chr5:4387424 5.50E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0815 K02148 - csv:101221574 709.523