Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0823 ATGTCCGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAACCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGTGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.98 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9051603 9052397 + ClG42_01g0082300.10 Clacu01g0823 240207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0823 264 MobiDBLite consensus disorder prediction 47 62 - -
Clacu01g0823 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Clacu01g0823 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Clacu01g0823 264 MobiDBLite consensus disorder prediction 1 44 - -
Clacu01g0823 264 MobiDBLite consensus disorder prediction 1 62 - -
Clacu01g0823 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0823 K16221 - - csv:101214586 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0823 Clacu-Chr1:9051603 Clacu02g1453 Clacu-Chr2:27948851 3.70E-75 dispersed
Clacu01g0823 Clacu-Chr1:9051603 Clacu06g1733 Clacu-Chr6:27941806 2.00E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0823 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.1e-68 255.0
Clacu02g1453 . 37 247 TCP Transcription Factor Family AT5G23280 59.9 5.6e-57 218.0
Clacu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Clacu05g2640 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Clacu04g1303 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Clacu11g1530 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Clacu11g1530 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Clacu05g1532 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Clacu01g0823 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Clacu02g1453 . 9 247 TCP Transcription Factor Family AT5G08330 55.8 8.0e-61 230.7
Clacu11g1530 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Clacu07g1656 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46990 PF03634 TCP 7.90E-32 No_clan Clacu TF