Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0827 ATGATGCCCATTTTGGACCACCACCATGATCACAATAATCAACCCCTCCTCCTCCCCGCCGATGATCTCGCCGCCGCTGTCCCCGCCCCCGCCTTCCATCGCAAGAAACGGATGCCCAGAAACCGCCGCCGCTCTTCTTCTAATCTTCCCTTCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATAACACTCCCCATCTCCCTCCTCCCCGGGTAATTGATCCAAGGAACCTGAAGTTTCTTTTCCAGAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATATAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGAGACTTTGTCAATGCCCATGGCTTACATCTAGGAGATTTCATCATGGTTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTGCGAGCAAGAAATATATTCCGACATAGCAACCAACGTCATGATCAACGACGACATTGTGTTTCAAGACTACGATGCTAGCAAAGCGGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAAGATCCTGTGTCATCATTCATCTATGACACTAGTTCTGCCTTCGACAACGATTCGCCTTTCGACTTTATGAGTGGATCAATGACCAACTACTCAAAAATGGGAGGCCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGACGACTTCTACTAA 831 45.25 MMPILDHHHDHNNQPLLLPADDLAAAVPAPAFHRKKRMPRNRRRSSSNLPFFPSSSSSSSSSNNTPHLPPPRVIDPRNLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMVYQDCEEHNYVIQAKKACEQEIYSDIATNVMINDDIVFQDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSKMGGLEGFGSVENLSLDDFY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9109251 9112572 - ClG42_01g0082700.10 Clacu01g0827 240211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0827 276 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 190 IPR044800 GO:0003700(InterPro)
Clacu01g0827 276 MobiDBLite consensus disorder prediction 31 73 - -
Clacu01g0827 276 Pfam B3 DNA binding domain 83 180 IPR003340 GO:0003677(InterPro)
Clacu01g0827 276 Gene3D - 79 196 IPR015300 -
Clacu01g0827 276 MobiDBLite consensus disorder prediction 44 68 - -
Clacu01g0827 276 FunFam B3 domain-containing transcription factor FUS3 79 193 - -
Clacu01g0827 276 ProSiteProfiles B3 DNA-binding domain profile. 83 185 IPR003340 GO:0003677(InterPro)
Clacu01g0827 276 SMART B3_2 83 185 IPR003340 GO:0003677(InterPro)
Clacu01g0827 276 CDD B3_DNA 81 183 IPR003340 GO:0003677(InterPro)
Clacu01g0827 276 SUPERFAMILY DNA-binding pseudobarrel domain 81 184 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0827 Clacu-Chr1:9109251 Clacu09g0915 Clacu-Chr9:8522117 2.10E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46992 PF02362 B3 2.00E-17 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0827 K09287 - csv:101222512 409.068