Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g0827 | ATGATGCCCATTTTGGACCACCACCATGATCACAATAATCAACCCCTCCTCCTCCCCGCCGATGATCTCGCCGCCGCTGTCCCCGCCCCCGCCTTCCATCGCAAGAAACGGATGCCCAGAAACCGCCGCCGCTCTTCTTCTAATCTTCCCTTCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATAACACTCCCCATCTCCCTCCTCCCCGGGTAATTGATCCAAGGAACCTGAAGTTTCTTTTCCAGAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATATAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGAGACTTTGTCAATGCCCATGGCTTACATCTAGGAGATTTCATCATGGTTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTGCGAGCAAGAAATATATTCCGACATAGCAACCAACGTCATGATCAACGACGACATTGTGTTTCAAGACTACGATGCTAGCAAAGCGGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAAGATCCTGTGTCATCATTCATCTATGACACTAGTTCTGCCTTCGACAACGATTCGCCTTTCGACTTTATGAGTGGATCAATGACCAACTACTCAAAAATGGGAGGCCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGACGACTTCTACTAA | 831 | 45.25 | MMPILDHHHDHNNQPLLLPADDLAAAVPAPAFHRKKRMPRNRRRSSSNLPFFPSSSSSSSSSNNTPHLPPPRVIDPRNLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMVYQDCEEHNYVIQAKKACEQEIYSDIATNVMINDDIVFQDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSKMGGLEGFGSVENLSLDDFY | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9109251 | 9112572 | - | ClG42_01g0082700.10 | Clacu01g0827 | 240211 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g0827 | 276 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 36 | 190 | IPR044800 | GO:0003700(InterPro) | |
Clacu01g0827 | 276 | MobiDBLite | consensus disorder prediction | 31 | 73 | - | - | |
Clacu01g0827 | 276 | Pfam | B3 DNA binding domain | 83 | 180 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g0827 | 276 | Gene3D | - | 79 | 196 | IPR015300 | - | |
Clacu01g0827 | 276 | MobiDBLite | consensus disorder prediction | 44 | 68 | - | - | |
Clacu01g0827 | 276 | FunFam | B3 domain-containing transcription factor FUS3 | 79 | 193 | - | - | |
Clacu01g0827 | 276 | ProSiteProfiles | B3 DNA-binding domain profile. | 83 | 185 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g0827 | 276 | SMART | B3_2 | 83 | 185 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g0827 | 276 | CDD | B3_DNA | 81 | 183 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g0827 | 276 | SUPERFAMILY | DNA-binding pseudobarrel domain | 81 | 184 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0827 | Clacu-Chr1:9109251 | Clacu09g0915 | Clacu-Chr9:8522117 | 2.10E-33 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46992 | PF02362 | B3 | 2.00E-17 | CL0405 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g0827 | K09287 | - | csv:101222512 | 409.068 |