Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0831 ATGGTGGCACATGCCTGCTGTCAAATCAAAAGGGGAATGGAGGGGGAGATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGCTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTGACTACATTTCCTATGTATCCATCTCTGTTTCCACTTAGACTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTTCATGATAACAGAGATGATGCATCTAATGGCTTAATGTGGCTTCGGGGAGGAGTTGGGGAACAGGGTCTACACTCACTGAATTTGCAATCTGTGGGCCCCCTGCCCTGGTTGCAGCAGAGACTTGACTCTTCCATGTTTGGAAATGATCATAACCAACAGTATCAAGCCATGTTGGCAGCTGGAATGCCAAACCTTGGAGGTGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGATGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAGGCACCAAACCAAGTTTTGGCAGAAAATCTACCTCAACACATTCTCCAGCAAACTCTACAAAATCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATTCCATTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCAGATTCCATTACCTCTAGAAGGAATATACTTGCATCATCATGTGCTGAAGGGACGGGAAATCTTTCCAATATCTACAGAAGTGGGCAGTCAATCCTAACTGAGCATTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATGCTCACTCAAACTCAATGTCATTTCCACCATTTTCTGGTAGAGACTCAATTCTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCACTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAACTCAGGGCAAGTTGATCCATCGAATCCAACTCGGACGTTTGTTAAGGTTTACAAATCTGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCGGGTATATCAAGATACTTTCTCCCCGGGACTTTCAGAAACTAGGGGAACAGGCAATCGAGTCCTTTAACCCTATCGTTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGGAAATGTTTCAGGACTACCATCTGTTGGTTCGCTAGAATATTGA 2685 45.81 MVAHACCQIKRGMEGEMGERGGVVSDCVGFRQRRNLLNYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGEQGLHSLNLQSVGPLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQMQQQQQQQQQQQLVQQSMPQNILQAPNQVLAENLPQHILQQTLQNQPEDLPNQQQHTYHDSIQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSDSITSRRNILASSCAEGTGNLSNIYRSGQSILTEHLPQQSPVSKNAHSQVDAHSNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHNSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVGYIKILSPRDFQKLGEQAIESFNPIVGQRLTSGGNEAGNVSGLPSVGSLEY 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9144969 9170584 - ClG42_01g0083100.10 Clacu01g0831 240215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0831 894 Pfam AUX/IAA family 764 854 IPR033389 -
Clacu01g0831 894 SUPERFAMILY DNA-binding pseudobarrel domain 156 301 IPR015300 -
Clacu01g0831 894 Gene3D - 336 408 - -
Clacu01g0831 894 ProSiteProfiles PB1 domain profile. 769 853 IPR053793 -
Clacu01g0831 894 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677(InterPro)
Clacu01g0831 894 SUPERFAMILY CAD & PB1 domains 762 843 - -
Clacu01g0831 894 Pfam Auxin response factor 298 380 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g0831 894 FunFam Auxin response factor 764 858 - -
Clacu01g0831 894 Gene3D - 170 274 IPR015300 -
Clacu01g0831 894 CDD B3_DNA 171 272 IPR003340 GO:0003677(InterPro)
Clacu01g0831 894 SMART B3_2 172 274 IPR003340 GO:0003677(InterPro)
Clacu01g0831 894 MobiDBLite consensus disorder prediction 594 619 - -
Clacu01g0831 894 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 64 860 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g0831 894 FunFam Auxin response factor 336 408 - -
Clacu01g0831 894 FunFam Auxin response factor 170 274 - -
Clacu01g0831 894 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677(InterPro)
Clacu01g0831 894 Gene3D - 765 858 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0831 Clacu-Chr1:9144969 Clacu03g0651 Clacu-Chr3:7105734 1.70E-260 dispersed
Clacu01g0831 Clacu-Chr1:9144969 Clacu01g2567 Clacu-Chr1:35910482 3.50E-271 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46994 PF02309 AUX_IAA 3.70E-08 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0831 K14486 - csv:101208098 1653.65