Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0854 ATGTCAAAAGAGGAGGTTATTATTTTGGACTGTTTGATCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAGGGAAGAGGATTTGTTTGGTTTGAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCAAACCCTATTTATAAGAAAGTGCCTGTTCTCTTGCATAATGGCAAGCCACTGAATGAAAGTTCTATTATTGTCAATTATATTGATGAGACTTGGGCATCTTCTTCCCCACTTCTTCCTTTTTCGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGATAAAAAGGTATTTGATGTGGGTTCCAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAGGCAGCCAAGAAAGAGTTGATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGTGACAAAGATTTCTTTGGAGGTGAAAGGTTTGGGATTGTGGATGTGATTGCAATCCCATTCACAAGTTGGTTCAATGCTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAACATTGCCCTAAAATCTCAGCTTGGGAAAAGAGATGTTTGCAAAAGGAGACTGTTGCAAAAAGTGGAACACACTTCTGCAATCTTGACTGCCAAGATACTGCACCACCTGCAAATGCCATCAAGTCGTTTGGATTGAGCACTAGTGGAGGCAGTTATCACACAAAACCCAAATGGAGAAAAGTGGCATATGGAGGTATTCAACCTAGGTTTGATGTCAACCACAGCCACGAGTCTTTTCTTGAAGATATTGTCATGAATTCCAATGTCTTCAAAAGGGATAAACTAAAGGTGATGTTGGACTTTGTTTCCATATCCGAATATATGTGCATTGTCGTCACGCTTGTTGGCTTGGTTTGGACATACGCACCCGGATCGACTCTTGGTTCCACTGTCAGGGCTCTTGGAGATCTTAAGAATATATGGTTAACCAATTGCATTTCTTTAAATGCTTCTATTGTGGCCTTCATCCTTATTACTTCACGTCTTCCATCTCGATCACATGTGTTCACCATAATATTGTTCTCATCGCAAATTGATCCTGCCAAAAAGTCATTCATTGCTGTTCTTTCTAAACCCATCATGGCAGAAACCGCAAAAACGGAAGAAATACACCAAACACAAACCAACATATCCATTGTCAACAATGTGTTCAATGGAAATAACTTCTTAACATGGAAGAGAGCAATCAAATTTGCTTTGGGAGCCAGGGACAAACTCAGTTTTGTCAATGGTAAAAAGAACAAACCTAAAGAAGATGCTACAGATTTTGATTCATGGCAAAAACAAGATTGCATGGTCATGGCCTGGATCTTAGGATCCATTTCAAAGGACATATCAACCAGCTTTCTCTACACCAGCAGCTCAAGGGAATTATGCAAAGAACTTGAGGAGAGGTATGGTGAGGATAAGGGGACTGTCAAGTTCCATATCCAGCCAAAAATCAACTCTATGAGGCAAGGTGATCAAACTGTGGCCACTAGTACACAAGAATCAAGAGACTTTGGGATGAATTGGCAGCCATAG 1569 40.6 MSKEEVIILDCLISPFCNRVKIALNEKGVSYESREEDLFGLKGGKSELLLKSNPIYKKVPVLLHNGKPLNESSIIVNYIDETWASSSPLLPFSPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEAAKKELIEILKQLEEALGDKDFFGGERFGIVDVIAIPFTSWFNAYEKVGNFKVEEHCPKISAWEKRCLQKETVAKSGTHFCNLDCQDTAPPANAIKSFGLSTSGGSYHTKPKWRKVAYGGIQPRFDVNHSHESFLEDIVMNSNVFKRDKLKVMLDFVSISEYMCIVVTLVGLVWTYAPGSTLGSTVRALGDLKNIWLTNCISLNASIVAFILITSRLPSRSHVFTIILFSSQIDPAKKSFIAVLSKPIMAETAKTEEIHQTQTNISIVNNVFNGNNFLTWKRAIKFALGARDKLSFVNGKKNKPKEDATDFDSWQKQDCMVMAWILGSISKDISTSFLYTSSSRELCKELEERYGEDKGTVKFHIQPKINSMRQGDQTVATSTQESRDFGMNWQP 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9678876 9685646 - ClG42_01g0085400.10 Clacu01g0854 240238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0854 522 CDD GST_N_Tau 6 83 - -
Clacu01g0854 522 SFLD Main.3: Omega- and Tau-like 2 203 IPR045073 -
Clacu01g0854 522 SUPERFAMILY Thioredoxin-like 12 111 IPR036249 -
Clacu01g0854 522 FunFam Glutathione S-transferase U20 93 207 - -
Clacu01g0854 522 SFLD Main (cytGST) 2 203 - -
Clacu01g0854 522 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 218 IPR010987 -
Clacu01g0854 522 MobiDBLite consensus disorder prediction 500 522 - -
Clacu01g0854 522 Pfam Glutathione S-transferase, N-terminal domain 11 82 IPR004045 -
Clacu01g0854 522 CDD GST_C_Tau 94 203 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu01g0854 522 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
Clacu01g0854 522 Coils Coil 123 146 - -
Clacu01g0854 522 FunFam Tau class glutathione S-transferase 1 92 - -
Clacu01g0854 522 Pfam Phosphatidylinositol N-acetylglucosaminyltransferase 240 303 IPR009450 GO:0006506(InterPro)|GO:0016020(InterPro)
Clacu01g0854 522 Pfam Phosphatidylinositol N-acetylglucosaminyltransferase 326 360 IPR009450 GO:0006506(InterPro)|GO:0016020(InterPro)
Clacu01g0854 522 Pfam gag-polypeptide of LTR copia-type 392 432 IPR029472 -
Clacu01g0854 522 Gene3D Glutaredoxin 2 92 - -
Clacu01g0854 522 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 203 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu01g0854 522 Pfam Glutathione S-transferase, C-terminal domain 120 197 IPR004046 -
Clacu01g0854 522 Gene3D - 93 211 - -
Clacu01g0854 522 SUPERFAMILY GST C-terminal domain-like 81 203 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0854 Clacu-Chr1:9678876 Clacu07g1056 Clacu-Chr7:25097989 4.60E-69 dispersed
Clacu01g0854 Clacu-Chr1:9678876 Clacu05g2634 Clacu-Chr5:34007930 3.80E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0854 K00799 - csv:101213628 365.155