Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0854 ATGTCAAAAGAGGAGGTTATTATTTTGGACTGTTTGATCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAGGGAAGAGGATTTGTTTGGTTTGAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCAAACCCTATTTATAAGAAAGTGCCTGTTCTCTTGCATAATGGCAAGCCACTGAATGAAAGTTCTATTATTGTCAATTATATTGATGAGACTTGGGCATCTTCTTCCCCACTTCTTCCTTTTTCGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGATAAAAAGGTATTTGATGTGGGTTCCAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAGGCAGCCAAGAAAGAGTTGATAGAGATTTTGAAGCAATTGGAGGAAGCTTTAGGTGACAAAGATTTCTTTGGAGGTGAAAGGTTTGGGATTGTGGATGTGATTGCAATCCCATTCACAAGTTGGTTCAATGCTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAACATTGCCCTAAAATCTCAGCTTGGGAAAAGAGATGTTTGCAAAAGGAGACTGTTGCAAAAAGTGGAACACACTTCTGCAATCTTGACTGCCAAGATACTGCACCACCTGCAAATGCCATCAAGTCGTTTGGATTGAGCACTAGTGGAGGCAGTTATCACACAAAACCCAAATGGAGAAAAGTGGCATATGGAGGTATTCAACCTAGGTTTGATGTCAACCACAGCCACGAGTCTTTTCTTGAAGATATTGTCATGAATTCCAATGTCTTCAAAAGGGATAAACTAAAGGTGATGTTGGACTTTGTTTCCATATCCGAATATATGTGCATTGTCGTCACGCTTGTTGGCTTGGTTTGGACATACGCACCCGGATCGACTCTTGGTTCCACTGTCAGGGCTCTTGGAGATCTTAAGAATATATGGTTAACCAATTGCATTTCTTTAAATGCTTCTATTGTGGCCTTCATCCTTATTACTTCACGTCTTCCATCTCGATCACATGTGTTCACCATAATATTGTTCTCATCGCAAATTGATCCTGCCAAAAAGTCATTCATTGCTGTTCTTTCTAAACCCATCATGGCAGAAACCGCAAAAACGGAAGAAATACACCAAACACAAACCAACATATCCATTGTCAACAATGTGTTCAATGGAAATAACTTCTTAACATGGAAGAGAGCAATCAAATTTGCTTTGGGAGCCAGGGACAAACTCAGTTTTGTCAATGGTAAAAAGAACAAACCTAAAGAAGATGCTACAGATTTTGATTCATGGCAAAAACAAGATTGCATGGTCATGGCCTGGATCTTAGGATCCATTTCAAAGGACATATCAACCAGCTTTCTCTACACCAGCAGCTCAAGGGAATTATGCAAAGAACTTGAGGAGAGGTATGGTGAGGATAAGGGGACTGTCAAGTTCCATATCCAGCCAAAAATCAACTCTATGAGGCAAGGTGATCAAACTGTGGCCACTAGTACACAAGAATCAAGAGACTTTGGGATGAATTGGCAGCCATAG 1569 40.6 MSKEEVIILDCLISPFCNRVKIALNEKGVSYESREEDLFGLKGGKSELLLKSNPIYKKVPVLLHNGKPLNESSIIVNYIDETWASSSPLLPFSPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEAAKKELIEILKQLEEALGDKDFFGGERFGIVDVIAIPFTSWFNAYEKVGNFKVEEHCPKISAWEKRCLQKETVAKSGTHFCNLDCQDTAPPANAIKSFGLSTSGGSYHTKPKWRKVAYGGIQPRFDVNHSHESFLEDIVMNSNVFKRDKLKVMLDFVSISEYMCIVVTLVGLVWTYAPGSTLGSTVRALGDLKNIWLTNCISLNASIVAFILITSRLPSRSHVFTIILFSSQIDPAKKSFIAVLSKPIMAETAKTEEIHQTQTNISIVNNVFNGNNFLTWKRAIKFALGARDKLSFVNGKKNKPKEDATDFDSWQKQDCMVMAWILGSISKDISTSFLYTSSSRELCKELEERYGEDKGTVKFHIQPKINSMRQGDQTVATSTQESRDFGMNWQP 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9678876 9685646 - ClG42_01g0085400.10 Clacu01g0854 240238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0854 522 CDD GST_N_Tau 6 83 - -
Clacu01g0854 522 SFLD Main.3: Omega- and Tau-like 2 203 IPR045073 -
Clacu01g0854 522 SUPERFAMILY Thioredoxin-like 12 111 IPR036249 -
Clacu01g0854 522 FunFam Glutathione S-transferase U20 93 207 - -
Clacu01g0854 522 SFLD Main (cytGST) 2 203 - -
Clacu01g0854 522 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 218 IPR010987 -
Clacu01g0854 522 MobiDBLite consensus disorder prediction 500 522 - -
Clacu01g0854 522 Pfam Glutathione S-transferase, N-terminal domain 11 82 IPR004045 -
Clacu01g0854 522 CDD GST_C_Tau 94 203 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Clacu01g0854 522 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
Clacu01g0854 522 Coils Coil 123 146 - -
Clacu01g0854 522 FunFam Tau class glutathione S-transferase 1 92 - -
Clacu01g0854 522 Pfam Phosphatidylinositol N-acetylglucosaminyltransferase 240 303 IPR009450 GO:0006506(InterPro)|GO:0016020(InterPro)
Clacu01g0854 522 Pfam Phosphatidylinositol N-acetylglucosaminyltransferase 326 360 IPR009450 GO:0006506(InterPro)|GO:0016020(InterPro)
Clacu01g0854 522 Pfam gag-polypeptide of LTR copia-type 392 432 IPR029472 -
Clacu01g0854 522 Gene3D Glutaredoxin 2 92 - -
Clacu01g0854 522 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 203 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Clacu01g0854 522 Pfam Glutathione S-transferase, C-terminal domain 120 197 IPR004046 -
Clacu01g0854 522 Gene3D - 93 211 - -
Clacu01g0854 522 SUPERFAMILY GST C-terminal domain-like 81 203 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0854 K00799 - - csv:101213628 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0854 Clacu-Chr1:9678876 Clacu07g1056 Clacu-Chr7:25097989 4.60E-69 dispersed
Clacu01g0854 Clacu-Chr1:9678876 Clacu05g2634 Clacu-Chr5:34007930 3.80E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g708 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00840 Cam01g0865 Cec01g0865 Cco01g0892 Clacu01g0854 Cmu01g0823 Cre09g1687 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g0599 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 4.8e-65 244.6
Clacu09g0601 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.2e-65 244.2
Clacu09g0600 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 1.1e-58 223.4
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.5e-66 248.8
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 1.8e-64 242.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.0e-59 226.9
Clacu09g0601 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.5e-60 229.9
Clacu09g0599 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.6e-59 226.5
Clacu09g0600 . 5 206 Glutathione S-transferase Gene Family AT1G02950 51.7 3.3e-52 202.2
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.2e-64 241.1
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.2e-62 235.7
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.0e-56 216.9
Clacu09g0599 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.1e-65 245.7
Clacu09g0601 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.0e-63 239.2
Clacu09g0600 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 1.1e-58 223.4
Clacu09g0601 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.6e-68 255.8
Clacu09g0599 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.0e-66 247.7
Clacu09g0600 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.8 1.4e-61 233.4
Clacu09g0602 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 4.9e-73 271.2
Clacu09g0599 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.2e-48 189.5
Clacu04g0811 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 5.6e-64 241.1
Clacu04g0814 . 3 216 Glutathione S-transferase Gene Family AT3G09270 53.0 8.0e-63 237.3
Clacu04g0803 . 224 421 Glutathione S-transferase Gene Family AT3G09270 52.8 6.0e-58 221.1
Clacu05g0286 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 1.3e-57 219.9
Clacu04g0815 . 3 212 Glutathione S-transferase Gene Family AT3G09270 53.8 3.3e-56 215.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78380 71.0 5.4e-88 320.9
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78380 70.4 1.2e-87 319.7
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78380 66.8 9.9e-82 300.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78380 59.0 2.4e-64 242.3
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.7 2.7e-55 212.2
Clacu07g1056 . 7 214 Glutathione S-transferase Gene Family AT1G78370 65.4 5.4e-80 294.3
Clacu07g1058 . 7 214 Glutathione S-transferase Gene Family AT1G78370 62.0 1.5e-74 276.2
Clacu07g1057 . 7 216 Glutathione S-transferase Gene Family AT1G78370 56.2 3.3e-69 258.5
Clacu01g0854 . 7 203 Glutathione S-transferase Gene Family AT1G78370 56.3 9.5e-61 230.3
Clacu07g1056 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 2.4e-80 295.4
Clacu07g1058 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.4 9.2e-80 293.5
Clacu07g1057 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 7.5e-74 273.9
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G78340 55.5 8.6e-62 233.8
Clacu07g1059 . 1 199 Glutathione S-transferase Gene Family AT1G78340 50.3 1.9e-53 206.1
Clacu07g1056 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 6.5e-61 230.7
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G17180 70.2 9.0e-91 330.1
Clacu07g1058 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.9 2.4e-83 305.4
Clacu07g1057 . 1 220 Glutathione S-transferase Gene Family AT1G17180 60.9 1.2e-79 293.1
Clacu01g0854 . 4 203 Glutathione S-transferase Gene Family AT1G17180 57.0 7.9e-63 237.3
Clacu07g1059 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.8 1.4e-56 216.5
Clacu07g1056 . 2 217 Glutathione S-transferase Gene Family AT1G17190 58.8 1.8e-75 279.3
Clacu07g1058 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.9 1.1e-72 270.0
Clacu07g1057 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.5 4.8e-68 254.6
Clacu07g1059 . 1 185 Glutathione S-transferase Gene Family AT1G17190 53.5 1.2e-50 196.8
Clacu07g1056 . 3 214 Glutathione S-transferase Gene Family AT3G43800 59.3 1.1e-72 270.0
Clacu07g1058 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.9 6.9e-70 260.8
Clacu07g1057 . 3 212 Glutathione S-transferase Gene Family AT3G43800 51.6 9.6e-64 240.4
Clacu01g0854 . 1 203 Glutathione S-transferase Gene Family AT3G43800 51.0 3.0e-57 218.8
Clacu07g1056 . 1 218 Glutathione S-transferase Gene Family AT1G53680 58.3 6.1e-71 264.2
Clacu07g1058 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 6.3e-68 254.2
Clacu01g0854 . 1 201 Glutathione S-transferase Gene Family AT1G53680 56.6 4.1e-59 224.9
Clacu07g1059 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.5 1.3e-52 203.4
Clacu02g0037 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 9.9e-62 233.4
Clacu05g0258 . 742 905 Glutathione S-transferase Gene Family AT2G02390 51.5 6.5e-45 177.6
Clacu02g0037 . 12 224 Glutathione S-transferase Gene Family AT2G02380 64.3 1.3e-76 283.1
Clacu05g0258 . 699 904 Glutathione S-transferase Gene Family AT2G02380 53.1 1.3e-57 219.9
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41210 67.9 3.1e-92 335.1
Clacu07g0801 . 101 337 Glutathione S-transferase Gene Family AT5G41240 66.2 3.5e-89 326.2
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02780 67.4 6.9e-89 323.9
Clacu10g2038 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.5e-83 305.4
Clacu02g1410 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.4e-80 295.0
Clacu02g1410 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.1e-85 313.5
Clacu10g2039 . 6 233 Glutathione S-transferase Gene Family AT3G55040 61.0 1.0e-78 290.4
Clacu10g2038 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 1.2e-77 287.0
Clacu10g2039 . 1 235 Glutathione S-transferase Gene Family AT5G02790 69.4 1.4e-94 342.8
Clacu10g2038 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 1.8e-89 325.9
Clacu02g1410 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 3.6e-82 301.6
Clacu02g1383 . 3 230 Glutathione S-transferase Gene Family AT1G19570 61.1 1.4e-77 286.2
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.1e-72 268.5
Clacu02g1383 . 3 229 Glutathione S-transferase Gene Family AT1G75270 65.4 1.7e-83 305.8
Clacu05g1301 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 3.9e-75 278.1
Clacu05g1301 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.0e-103 370.5
Clacu02g1383 . 5 228 Glutathione S-transferase Gene Family AT5G16710 54.9 5.1e-69 258.1
Clacu11g1781 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.0 2.7e-110 395.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006822 1 3 1 1 1 1 1 1 0 1 2 2 1 1 1 1 1 0 0 1 0 1 1 1 1 1 1 1 3 1 32