Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0855 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACTGTTGCAGCAGCTCTCACATCTCCGGTTACCTCCCATTTCTCTTCTACAACCTCCTCGCCGTCGCCGGAATCCGCCCCGTCGCTCTCCGAGTGGAGATCTGCTCGTGCCACCTACTACGCCGCCTCCGACCCTCGCGATGCGGTGGGCGGAGCCTGTGGATATGGCGATTTAGTGAAGGCAGGCTATGGCATGGCGACAGTGGGACTCAGCGAGTCGCTATTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGTGTTGAGGACCTCCGGTGGTGTATTCCCGGTACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACAGCTGAGGGCGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAAGGGGGTATTCGGTATACGGTTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGTAATGTTGCAGGCGCTGGAGATGTGAGTGCTGTAAAGATCAAGGGGTCGAGAACCGGTTGGCTTCCAATGGGTCGTAATTGGGGGCAAAACTGGCACATAAATGCTGATTTGAACCATCAAGCCCTTTCCTTCGAAGTCACCAGCAGTGATGGAGTAACAATTACATCCTACAATGTTGCTCCCAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAGCAATTTGAATCTTGA 807 51.92 MSPSLPLHFLFTVAAALTSPVTSHFSSTTSSPSPESAPSLSEWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9694199 9698474 - ClG42_01g0085500.10 Clacu01g0855 240239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0855 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Clacu01g0855 268 PANTHER EXPANSIN-A15 20 266 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Clacu01g0855 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576(InterPro)
Clacu01g0855 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576(InterPro)
Clacu01g0855 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Clacu01g0855 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576(InterPro)
Clacu01g0855 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
Clacu01g0855 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Clacu01g0855 268 SMART dpbb_1 78 164 IPR007112 -
Clacu01g0855 268 Gene3D - 27 170 IPR036908 -
Clacu01g0855 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Clacu01g0855 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Clacu01g0855 268 CDD DPBB_EXPA_N 42 169 - -
Clacu01g0855 268 Pfam Lytic transglycolase 79 164 IPR009009 -
Clacu01g0855 268 Gene3D - 175 266 IPR036749 -
Clacu01g0855 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Clacu01g0855 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664(InterPro)
Clacu01g0855 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0855 Clacu-Chr1:9694199 Clacu02g2063 Clacu-Chr2:33926913 1.60E-73 dispersed
Clacu01g0855 Clacu-Chr1:9694199 Clacu07g0524 Clacu-Chr7:6700707 9.20E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0855 - - - 0.0