Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0857 ATGTTCACTAACGACCAGAGGCAAGCGGAGCGAACTGGAAAATATGGAACTCCAAGGCTCCACTACCTCCAGGAATTAGTGAATGAATTTCAGAGCTCAACTAGTCAAGAAACAAAAGAAAAAGTTGTTGCGAATTTGGCAAACTTTTCTTATGATCCTTACAATTATTCCTTCTTACGTCAGCTCAATGTTCTGGAGCTTTTCTTGGACTGCACAACAGAGCCAAACGAGAAGCTTATCGAATTTGGTATTGGCGGGATCTGCAATTCTTGTGTTGACCCTGCTAATGCTTCTATTATAACTCAGTGTGGTGGAATTCCCCTCATCATTGAATGCTTGTCAAGTCCTGTAACAAACACTGTGAATTATGCACTTGGCGCCTTATATTACCTCTGCAATGCATTGAATAAGGAAGAGATTATGAAACCAGAAGTGGTAGATGTCATAAAGAGATATGCAGTGGCTGAGAGTGTGAGCTTTAGTAATCTGGCTAAAGCAATTCTGGACAAACACCTATCTGATAGAAATTGA 531 40.49 MFTNDQRQAERTGKYGTPRLHYLQELVNEFQSSTSQETKEKVVANLANFSYDPYNYSFLRQLNVLELFLDCTTEPNEKLIEFGIGGICNSCVDPANASIITQCGGIPLIIECLSSPVTNTVNYALGALYYLCNALNKEEIMKPEVVDVIKRYAVAESVSFSNLAKAILDKHLSDRN 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9727784 9729457 + ClG42_01g0085700.10 Clacu01g0857 240241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0857 176 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515(InterPro)
Clacu01g0857 176 SMART arm_5 52 92 IPR000225 GO:0005515(InterPro)
Clacu01g0857 176 SMART arm_5 93 133 IPR000225 GO:0005515(InterPro)
Clacu01g0857 176 Gene3D - 16 170 IPR011989 -
Clacu01g0857 176 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 7 1 175 IPR042462 -
Clacu01g0857 176 SUPERFAMILY ARM repeat 22 153 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0857 K24825 - - csv:101211784 337.035
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00843 Cam01g0869 Cec01g0868 Cco01g0895 Clacu01g0857 Cmu01g0826 Cre09g1684 . . . . . . . . . . . Bda13g01816 Bpe14g00062 . . Bma02g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002963 1 7 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 9 9 1 54