Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0860 ATGGCTTTCCAGAAGATCAAGGTCGCCAATCCCATCGTTGAGATGGACGGAGATGAAATGACTCGAGTTATCTGGGAATCAATTAAGAATAAGCTCATTTTCCCCTTCTTGGAATTGGACATCAAGTATTTTGACCTCGGCCTTCCACACCGTGATGCCACAGATGATAAAGTTACAATTGAAAGTGCAGAAGCTACTTTAAAGTACAATGTAGCAATCAAATGTGCAACAATCACTCCAGATGAGGCACGTGTTAAGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCGAATGGGACAATCAGGAATATTCTGAATGGTACTGTTTTCAGAGAACCAATTCTTTGCAAAAATGTTCCTCGCCTTGTACCAGGTTGGACGAAGCCTATCTGTATTGGAAGACATGCTTTTGGTGATCAATACAGAGCTACTGATACAGTTATTAAAGGACCTGGAAAATTGAAATTAGTTTTTGAGGGGCAAGAGACGCAAGAGATAGAGGTTTTCAATTTTACTGGTGCTGGAGGAGTAGCATTAGCCATGTATAACACTGATGAGTCCATCCGCTCCTTTGCTGAGGCATCAATGAACACTGCTTATGAGAAGAAATGGCCTCTTTACCTAAGCACAAAAAATACTATTCTAAAGAAATATGATGGAAGATTCAAGGATATATTCCAAGAAGTCTATGAATCCCAGTGGAAATCAAAGTTTGAGGCTGCTGGCATATGGTATGAACACCGTCTCATCGATGATATGGTGGCTTATGCACTTAAGAGTGAAGGAGGTTATGTCTGGGCGTGCAAGAACTATGATGGAGATGTTCAGAGTGACTTCTTAGCTCAAGGATTTGGATCTCTTGGGTTGATGACCTCTGTATTGGTTTGCCCTGATGGAAAGACAATTGAAGCAGAAGCTGCTCATGGTACTGTTACACGGCATTTTAGGGTTCATCAAAAAGGAGGTGAAACCAGCACAAACAGTATTGCATCCATTTTTGCTTGGTCTCGTGGCCTTGCTCACAGGGCAAAACTAGATGACAATGCTAGTCTCTTAGAGTTCACCGAGAAACTAGAATCGGCTTGTATTAATACTGTGGAATCTGGGAAGATGACCAAGGATCTTGCTCTTATCCTTCATGGTCCCAAGCTTTCTCACTCCTTAAGGCATAGTGGCTAG 1179 42.07 MAFQKIKVANPIVEMDGDEMTRVIWESIKNKLIFPFLELDIKYFDLGLPHRDATDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKQMWRSPNGTIRNILNGTVFREPILCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKGPGKLKLVFEGQETQEIEVFNFTGAGGVALAMYNTDESIRSFAEASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYESQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWSRGLAHRAKLDDNASLLEFTEKLESACINTVESGKMTKDLALILHGPKLSHSLRHSG 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9766038 9773113 + ClG42_01g0086000.10 Clacu01g0860 240244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0860 392 Gene3D Isopropylmalate Dehydrogenase 3 390 - -
Clacu01g0860 392 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 3 382 - -
Clacu01g0860 392 SMART Iso_dh_2 11 378 IPR024084 -
Clacu01g0860 392 ProSitePatterns Isocitrate and isopropylmalate dehydrogenases signature. 270 289 IPR019818 GO:0000287(InterPro)|GO:0016616(InterPro)|GO:0051287(InterPro)
Clacu01g0860 392 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 3 386 IPR004790 GO:0004450(InterPro)|GO:0004450(PANTHER)|GO:0005739(PANTHER)|GO:0006102(PANTHER)|GO:0006102(InterPro)|GO:0006739(PANTHER)
Clacu01g0860 392 Pfam Isocitrate/isopropylmalate dehydrogenase 7 378 IPR024084 -
Clacu01g0860 392 PIRSF IDH_NADP 1 390 IPR004790 GO:0004450(InterPro)|GO:0006102(InterPro)
Clacu01g0860 392 NCBIfam isocitrate dehydrogenase (NADP(+)) 4 387 IPR004790 GO:0004450(InterPro)|GO:0006102(InterPro)
Clacu01g0860 392 FunFam Isocitrate dehydrogenase [NADP] 3 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0860 K00031 - - csv:101211294 768.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0860 Clacu-Chr1:9766038 Clacu09g1957 Clacu-Chr9:34455297 1.60E-188 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g717 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00846 Cam01g0871 Cec01g0869 Cco01g0897 Clacu01g0860 Cmu01g0828 Cre09g1682 . . . . . . . . . . . . Bpe14g00063 . . Bma02g00562 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001183 3 5 3 4 3 2 4 2 2 1 2 2 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 3 5 3 77