Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0862 ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGTGATTCTGAGACGGCAGTGGGAGTGGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGAAAGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAGGTGAAATTGAGGGAAGGTTATTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAAAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTGAATGATCTCTTGATCGAGAAGAACAAAGAAACTGGATGGGATACTCCTATTCATGTTGATGCTGCTAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATTTGGAGGAACAAAGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCGGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTTCTAAAGGAAGGACTCGAAAGAACAGGGCGGTTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGGTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTCTCTCGCACACTTGCTGAGCGTCTTGTGACGGATATTGAGAAAACGCTGCACGAGCTCGATAGCCTCCCGTCGAGGGCTGATATCAAAACGACGGTGGCCGGAGAAGAGACACAGAAGAACGACGTGGTGGTGGCGAAGAAGAGTGCGCTGGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAG 1500 46.53 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLERTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVTDIEKTLHELDSLPSRADIKTTVAGEETQKNDVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9828393 9837813 + ClG42_01g0086200.10 Clacu01g0862 240246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0862 499 Gene3D - 66 360 IPR015421 -
Clacu01g0862 499 Gene3D - 361 448 - -
Clacu01g0862 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Clacu01g0862 499 CDD DOPA_deC_like 59 439 - -
Clacu01g0862 499 FunFam Glutamate decarboxylase 66 360 - -
Clacu01g0862 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Clacu01g0862 499 FunFam Glutamate decarboxylase 1 65 - -
Clacu01g0862 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Clacu01g0862 499 Gene3D - 1 65 - -
Clacu01g0862 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Clacu01g0862 499 FunFam Glutamate decarboxylase 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0693 Clacu-Chr1:7602926 Clacu01g0862 Clacu-Chr1:9828393 5.20E-243 dispersed
Clacu01g0694 Clacu-Chr1:7621455 Clacu01g0862 Clacu-Chr1:9828393 8.60E-243 dispersed
Clacu01g0862 Clacu-Chr1:9828393 Clacu04g1335 Clacu-Chr4:27208034 3.50E-228 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0862 K01580 - csv:101216119 994.571