Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0867 ATGGCGTGCCGGAATCTCCTCCGGCTGTGTTTTTCATCTTTGGTGTTCCTTGTTTTCATATTCTTTCCTGTAGGAGAAGCAGAGGCGGATCTTGCGTCGGACACGGCGGCGCTGGTGGCGCTTCAGAAGGCCATGGGTGTTTTGAGCCGGACTCGCTATTGGAACCTCTCCGACAAGACTCCATGTTTCTGGATTGGCGTTACTTGCGGCGGTGGGAGGGTTACTGAACTGCGGCTTCCCGGCGTTGGTCTCGTCGGCCAACTTCCTTTAGGGCTTGGAAATTTAACTCAACTTGAAACCCTGTCTCTTCGCTCTAACATGCTTTCAGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTCCCTCCGGAACCTCTACTTGCAATGGAACTCGTTTTCCGGCGAGATTCCTCCGGTTTTGTTCAGTATTCAGAGTCTTGTTCGCCTGAATTTGGCCCACAACAAGTTCGTCGGTCCGATTTCATTAGGTTTCAATAATCTCACGAACCTACAGGTTCTCAATTTGGAAGAGAATCAACTCGATGGAATTATTCCTGATTTGAACATTCCCTCGCTCAATGCTCTCAATGTTTCTTTCAATCGTCTCAATGGCTCTATCCCTTCGCGATTTTCCGATCAACCAGCCAATGCCTTCGACGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCAACAGCGAGAAGAAGAAATTATCCGCTGGAGCAATCGCCGCAATCATTATCGGAAGTTTGATTGTATTCGTGCTCATCGTTCTGATTTTGATCTTTCTGTGCCGGAAGACGATCAAGATTAATCGGCCGAATGATGGTCAGACGATGGCGACAAGCTCCGGGAGATTGTCGTCGGAGGTTGAGAGTGCAGTTGGCGGAAATAGAGGAGGTGGGAATGAGAGGAATTTGGTGTTCTGTAGGAAAGGAGAAAGTGGGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAGGTATTAGGGAAAGGAAGTTTTGGGTCAACTTACAAGGCAGCTCTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAAGGGTTACTATTATGGCAGAGATGAGAAGCTTCTGCTCTGTGATTATGTCTCCATGGGAAGCTTATCTGTACATTTACATGGCAACAAAGATCCTAGTAGGACTTCATTGAAATGGGAAGCAAGGGTTGGCATTGCGCTTGCAGCTGCTCGGGGGATTACGTATCTACATTCTCGACGACCTCCGACCTCTCATGGCAACATAAAGTCTTCAAACATTCTCCTCAACAGATCCCATACAGCTTGTGTCTCTGACTTTGGTCTCATTCAGATTGCAAGTCCTACATCCACTCCAAACCATGTTGCAACCTACCGCGCCCCTGAAGTCACCGATCCTCGTAAAGTATCCCTGAAAGCAGATGTTTACAGTTTTGGTGTGGTAATTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGGCAATGCTCAATGACGATGGCGTAGACCTCCCACGATGGGTGCACTCGAAGATCGAAGAGGAGAAGACTGCTGAAGTGTTCGATGAGGAGCTATTAGAATGCAAGAATGGCTTGGATGAAATGGTGCAACTTCTGCAACTTGCCATGTTATGTACAGCACCACACCCGGATAGTCGACCTACGATGGCGAAAGTGACGAGTCGAATCGATGAAATATATCATTCTATCTTACTGAAAGAACAAGATACGAGCATCGACAAGTTTTATGATGTGGACAGTACTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGATTCCTCTTCCACCTTCGATCTAG 1905 47.14 MACRNLLRLCFSSLVFLVFIFFPVGEAEADLASDTAALVALQKAMGVLSRTRYWNLSDKTPCFWIGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRSLRNLYLQWNSFSGEIPPVLFSIQSLVRLNLAHNKFVGPISLGFNNLTNLQVLNLEENQLDGIIPDLNIPSLNALNVSFNRLNGSIPSRFSDQPANAFDGNSLCGKPLSPCNSEKKKLSAGAIAAIIIGSLIVFVLIVLILIFLCRKTIKINRPNDGQTMATSSGRLSSEVESAVGGNRGGGNERNLVFCRKGESGFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLCDYVSMGSLSVHLHGNKDPSRTSLKWEARVGIALAAARGITYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPTSTPNHVATYRAPEVTDPRKVSLKADVYSFGVVILELLTGKAPNSAMLNDDGVDLPRWVHSKIEEEKTAEVFDEELLECKNGLDEMVQLLQLAMLCTAPHPDSRPTMAKVTSRIDEIYHSILLKEQDTSIDKFYDVDSTVSQQFYSADSIMIPLPPSI 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9908779 9911165 - ClG42_01g0086700.10 Clacu01g0867 240251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0867 634 PANTHER OS05G0588300 PROTEIN 11 596 IPR050994 -
Clacu01g0867 634 Pfam Protein tyrosine and serine/threonine kinase 328 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0867 634 SUPERFAMILY L domain-like 50 212 - -
Clacu01g0867 634 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Clacu01g0867 634 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Clacu01g0867 634 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0867 634 Gene3D Ribonuclease Inhibitor 34 142 IPR032675 -
Clacu01g0867 634 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524(InterPro)
Clacu01g0867 634 FunFam Probable inactive receptor kinase RLK902 31 188 - -
Clacu01g0867 634 SMART LRR_typ_2 95 118 IPR003591 -
Clacu01g0867 634 SMART LRR_typ_2 119 143 IPR003591 -
Clacu01g0867 634 SMART LRR_typ_2 167 190 IPR003591 -
Clacu01g0867 634 Gene3D Ribonuclease Inhibitor 143 231 IPR032675 -
Clacu01g0867 634 FunFam pollen receptor-like kinase 1 294 398 - -
Clacu01g0867 634 SUPERFAMILY Protein kinase-like (PK-like) 328 588 IPR011009 -
Clacu01g0867 634 Pfam Leucine Rich Repeat 121 141 IPR001611 GO:0005515(InterPro)
Clacu01g0867 634 Pfam Leucine Rich Repeat 169 186 IPR001611 GO:0005515(InterPro)
Clacu01g0867 634 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Clacu01g0867 634 Gene3D Transferase(Phosphotransferase) domain 1 399 603 - -
Clacu01g0867 634 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0867 Clacu-Chr1:9908779 Clacu05g1292 Clacu-Chr5:13001832 8.10E-137 dispersed
Clacu01g0867 Clacu-Chr1:9908779 Clacu04g1104 Clacu-Chr4:25289006 2.00E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73238 PF07714 PK_Tyr_Ser-Thr 1.50E-35 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0867 - - - 0.0