Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0869 ATGGAGAACAACCAACCTGAGAATCAACATCCTCTTCACAAAACCACTAGCTTCAACGATGCCCCCAAATTGGATGCTGTTGCTGATGATGCCAATCTCGCCCCTCCTCTCCCTCCTCTTCTACAAACTGATGCTGCTCTAAAATCTTTGGAGGATCAGGATCAGAATAATCAGAATCAGCATCAGGATCAACCTCAGGATCAGGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGAAGAAGGAAGTGGAGGAGGAAGAGAACACCAAGGAAGGGGAGGAAAATACTGAGGTTGAACAATCCGACAACGAACCGGATCTTCATTACAATCTCCATACCATTCTTGAAGATGTCGATCAATTTCTCTCAACTCCTCACGGTTCTCGTGATCGAGAGGAAGATTCTGTTGTTCAAATTCCTCAGTTCATCGACAAATTCTTGGATCTCGTCGATGCCAAGATTGAGCAATACAATAACGACGAATCGAATGCGAAGGAGAAAGAGTGTAGAGTACCGGAGGATGAGTCCACGTTTCTCGAAGCCGTCGATCGGATATCCAAGCTGAAAACTGCAATTCACGAAATGAAATTGGAAGAGGATAAGAATTCGTTGATCAATCGCATCGGGAGCACTCAACAGCGAGCGATTTCTTATTTGGAAGAAGATTTCAGATTCTTTCTCGAGGAATCTAGAAACAGCGATTCCGATCCTGCTGCCGATACGAAAGGGAAACAGGAACAGGATCGTTCTGCATTACCGGACAATGAATCCGATCAGTTCCAGTTTCCAGGTTACTCCGACGAGATCGTGAACTATTTGAACAAAATCGCTAAGCAAATGATTTCCGGTGGATACGAATCGGAATGCTGCCAAGCCTACATGGTTGCGAGAAGAAACATATTCGAAGACGCCTTGCTGAAGCTCGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAGTTGGGAATCAATGGAGAGGGAGATCGCGACATGGATTAGAACCATCAAGCAATGCGCCAGCATTTTATTCTCCGGCGAACGGAATCTCGTCGAATCTGTATTTTCATCGTATCCTCCAATGTCTGCCAGTCTGTTTAGCAATCTAACTCGCGGCATTATGATTCAACTCCTAAATTTCTCAGAAGGTGTAGCAATGACGAAACGCTCCGCCGAGAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGTGACATGGTCCCAAAAATGGAAGTATTATTTCCAGAAGAATCCGCTAACGAGCTCAAAACAGAAACCACAACCGCTCGAACTCGTCTAGGCGAAGCGGCGATTTGCATATTTTGCGATCTCGAGAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTAACTCGATACACCATAAACTACTTGAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATTTTCAAAGAGCATTCAAAGATCGAACGAGCCGATTCAACAAGTCGACCACATTTCGAAGGCGAACAAGCACCACAATACAACTCTAGCATTGACAATCAATCCCCATTCGCGGTTGAACTGACGCGAGTAATGGAGCTCCTGGACTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGATATAGCACTGAGTTCGATTTTCATGATGAACAACGGACGATACATCTTGCAGAAGATCAAAGGATCTGCAGATATCCATGAACTAGTAGGCGATACGTGGTACAGGAAGAGATCTTCGGATTTGCGTCAGTATCACAAGAATTACCAGAGAGAAACGTGGGGGAAGTTGTTAGGTTGTTTGAACCACGAAGGATTAACAGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAGGAGAGGTTTAAAGGATTCAACGCGCTGTTCGAAGAGATTCATAAAACACAGAGCTCGTGGATCATAAGCGACGAGCAACTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTACAGATCATTCTTAGGGAGGTTTTCGCAGGTTTTGGATCCGGGGAGACAAACAGAGAAATATATAAAGTTTCAGCCTGAAGATATAGAGACATACATAGATGATCTATTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2175 44.97 MENNQPENQHPLHKTTSFNDAPKLDAVADDANLAPPLPPLLQTDAALKSLEDQDQNNQNQHQDQPQDQEEKEKEKEKEKEKEKEEEEKKEVEEEENTKEGEENTEVEQSDNEPDLHYNLHTILEDVDQFLSTPHGSRDREEDSVVQIPQFIDKFLDLVDAKIEQYNNDESNAKEKECRVPEDESTFLEAVDRISKLKTAIHEMKLEEDKNSLINRIGSTQQRAISYLEEDFRFFLEESRNSDSDPAADTKGKQEQDRSALPDNESDQFQFPGYSDEIVNYLNKIAKQMISGGYESECCQAYMVARRNIFEDALLKLGFEKHSIDDIQKMSWESMEREIATWIRTIKQCASILFSGERNLVESVFSSYPPMSASLFSNLTRGIMIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMEVLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPQYNSSIDNQSPFAVELTRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDTWYRKRSSDLRQYHKNYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLGRFSQVLDPGRQTEKYIKFQPEDIETYIDDLFDGNPSSMARRRT 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9936741 9938915 - ClG42_01g0086900.10 Clacu01g0869 240253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0869 724 MobiDBLite consensus disorder prediction 87 108 - -
Clacu01g0869 724 Coils Coil 155 175 - -
Clacu01g0869 724 MobiDBLite consensus disorder prediction 1 16 - -
Clacu01g0869 724 MobiDBLite consensus disorder prediction 64 86 - -
Clacu01g0869 724 PANTHER EXOCYST COMPLEX PROTEIN EXO70 86 715 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu01g0869 724 MobiDBLite consensus disorder prediction 48 63 - -
Clacu01g0869 724 FunFam Exocyst subunit Exo70 family protein 169 720 - -
Clacu01g0869 724 MobiDBLite consensus disorder prediction 1 120 - -
Clacu01g0869 724 MobiDBLite consensus disorder prediction 238 269 - -
Clacu01g0869 724 Pfam Exocyst complex component Exo70 N-terminal 155 236 - -
Clacu01g0869 724 Pfam Exo70 exocyst complex subunit C-terminal 340 710 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu01g0869 724 Gene3D Exocyst complex component Exo70 161 722 - -
Clacu01g0869 724 MobiDBLite consensus disorder prediction 238 261 - -
Clacu01g0869 724 Coils Coil 66 104 - -
Clacu01g0869 724 SUPERFAMILY Cullin repeat-like 181 713 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0869 K07195 - - csv:101206040 1165.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0869 Clacu-Chr1:9936741 Clacu07g1547 Clacu-Chr7:30101243 1.20E-173 dispersed
Clacu01g0869 Clacu-Chr1:9936741 Clacu10g2053 Clacu-Chr10:33944797 1.00E-71 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2379 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.7e-266 913.7
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Clacu05g2379 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Clacu01g1567 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Clacu05g2379 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.7e-166 580.9
Clacu03g0048 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Clacu03g0048 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Clacu07g1547 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Clacu01g0869 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 5.9e-189 657.9
Clacu07g1457 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Clacu07g1457 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Clacu07g1457 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Clacu03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 3.8e-225 778.1
Clacu03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.8e-211 732.6
Clacu08g1414 . 47 718 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Clacu10g2053 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31