Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0907 ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCATCTCTGCAGCAGCAGATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA 519 51.06 MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10716741 10720266 + ClG42_01g0090700.10 Clacu01g0907 240291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0907 172 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Clacu01g0907 172 MobiDBLite consensus disorder prediction 129 154 - -
Clacu01g0907 172 Coils Coil 96 123 - -
Clacu01g0907 172 MobiDBLite consensus disorder prediction 129 152 - -
Clacu01g0907 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 137 - -
Clacu01g0907 172 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0907 Clacu-Chr1:10716741 Clacu07g0465 Clacu-Chr7:5665260 1.50E-45 dispersed
Clacu01g0907 Clacu-Chr1:10716741 Clacu02g1901 Clacu-Chr2:32536253 3.50E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47000 PF03195 LOB 2.50E-43 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0907 - - - 0.0