Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0940 ATGGCCGCAAAAGATGCAGAGCAAGTCTTGGACGTGCAGTCGGTTGTCGAAGCAGTAGTTGCAAACGAAGACGCCGATGTTCCTAGCTACGAAGTAGAAAGCCTCTGCATGCGTTGCGGCGAAAACGGGACAACAAGATTTTTATTAACTTTAATTCCGCACTTCAGAAAGATCTTGTTGTCAGCCTTTGAATGTCTACATTGTGGTGAGAGGAACAATGAAGTCCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAGGCGACCAGAAGATGCTCAATCGACAAGTGGTAAAATCTGAATCTGCCATTATTAAGATCCCAGAATTGGATTTTGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTGTGGAAGGTATATTGGTACGAGCCGCAGATGAATTAGAAGCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCAGTTTCTCCTGAAACTGAAAGCTTGTGCCATGGGAGATTCATCATTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATTGAGAACCCATTTGCACCAGCTAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTGGGTTATTACGTTGAACCATCACAACCAGCAGAAGCTGAGGATGGAGCATCAACAGGTGGAGTTGATGCTTGTAATCAAGTTAGAGGAGAGGCACATGGATCTGTAGGAGCAACGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACTTTCCCATCAACATGTGGAGCTTGTGCAGTTAGGTGTGAGACTCGAATGTTTGTAACCAAAATTCCCTACTTCCAAGAAGTGATTGTCATGGCAACTACTTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGAGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTTTGTGTGAAGGATGTTAGAGATCTCAGTCGAGATGTGATAAAGTCAGATACTGCAAGTGTAAAAGTCCCAGATCTTGACTTGGAGCTGACTAGTGGCACTCTTGGGGGAATTGTTACAACTGTCGAAGGTTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACATGGATTTACTTTTGGAGACAGTCTTGATGAAAATAGAAGAAACAAATGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAACAGCCTTGGACTCTCATCCTTGATGATGCACTAGCTAATTCGTTTATTGCACCAGTGACTGATGATATGAAAGATGACCATCAGTTAACATGCGAGGAATACGAGAGATCCTGGGAACAGAATGAGGAACTTGGTTTGAACGACATGGACACTTCGGCCGCTGATGCTGCATATAATTAA 1473 44.33 MAAKDAEQVLDVQSVVEAVVANEDADVPSYEVESLCMRCGENGTTRFLLTLIPHFRKILLSAFECLHCGERNNEVQFAGEIQPRGCCYCLEVHAGDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAADELEALQEERRKVDPQTAEAIDQFLLKLKACAMGDSSFSFILDDPAGNSFIENPFAPAKDPSLSIKFYERTPEQQASLGYYVEPSQPAEAEDGASTGGVDACNQVRGEAHGSVGATAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVRCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKDVRDLSRDVIKSDTASVKVPDLDLELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENRRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTCEEYERSWEQNEELGLNDMDTSAADAAYN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11382605 11406429 + ClG42_01g0094000.10 Clacu01g0940 240324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0940 490 Gene3D ZPR1, zinc finger domain 279 334 IPR042452 -
Clacu01g0940 490 Gene3D ZPR1, zinc finger domain 26 79 IPR042452 -
Clacu01g0940 490 Pfam ZPR1 zinc-finger domain 31 83 IPR004457 GO:0008270(InterPro)
Clacu01g0940 490 Pfam ZPR1 zinc-finger domain 283 338 IPR004457 GO:0008270(InterPro)
Clacu01g0940 490 FunFam Zinc finger protein ZPR1 335 477 - -
Clacu01g0940 490 Pfam ZPR1 jelly-roll domain 99 221 - -
Clacu01g0940 490 Pfam ZPR1 jelly-roll domain 352 477 - -
Clacu01g0940 490 PANTHER ZINC FINGER PROTEIN ZPR1 8 487 IPR040141 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Clacu01g0940 490 NCBIfam ZPR1 zinc finger domain 290 481 IPR004457 GO:0008270(InterPro)
Clacu01g0940 490 NCBIfam ZPR1 zinc finger domain 36 218 IPR004457 GO:0008270(InterPro)
Clacu01g0940 490 FunFam zinc finger protein ZPR1 80 221 - -
Clacu01g0940 490 FunFam Zinc finger protein ZPR1 24 79 - -
Clacu01g0940 490 FunFam Zinc finger protein ZPR1 280 334 - -
Clacu01g0940 490 Gene3D ZPR1, A/B domain 80 221 IPR042451 -
Clacu01g0940 490 Gene3D ZPR1, A/B domain 335 477 IPR042451 -
Clacu01g0940 490 Coils Coil 130 150 - -
Clacu01g0940 490 SMART zpr1 289 449 IPR004457 GO:0008270(InterPro)
Clacu01g0940 490 SMART zpr1 34 194 IPR004457 GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0940 K06874 - csv:101208000 921.768