Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0946 ATGCCTTACGATCCTCACTTTCGGGCTGATGTTCCCGTAAATGTTAACGACAACAAATTCACAATTTATCCAAGAGCTCTAAACATTACATGGGGTAATGATAAGCGATATTGGAACTTACCTCGTCGAGACCCGAAGAAGGAAGAGGGTTTTGCAGAGCTGAAACAAGTATGCTGGTTGGAAGTAACTGGCTCAACTGAGAAAGAAGTTGTGCCTGGAAAAGAGTACAAAGTGGGGTTTGTGGTATCACTAAGGCCAGATGCTTTTGGATGGGATGATTGTAGCGTTTACATAATGGCTAAGATTGGGAAAAAGGGGAGTTTCTCTTTCAAGAAAATCAGTCTTGCAGGCAAACCTACAGATCTCACAAAATTTACCATTCCTAATGATGATGATAAGTTGACCATCAAAGTCGGTAATCCCAAAGAACCCAAACCGTCTGAAAATGATGATCTAAACCTCTATTTTGGTCTCTATGAGGTGTTCACTCCACCGATAAAAGCACTCAATCAAAGTAACAGGAAAAATGTATACTTCCTCACAATTGGATTTCACCAAATATTGAATTATAAAAGGGGGAAGCCTAAGGCATTGTTGAAGAGAAGGATTTTTCCATTTTAG 621 39.77 MPYDPHFRADVPVNVNDNKFTIYPRALNITWGNDKRYWNLPRRDPKKEEGFAELKQVCWLEVTGSTEKEVVPGKEYKVGFVVSLRPDAFGWDDCSVYIMAKIGKKGSFSFKKISLAGKPTDLTKFTIPNDDDKLTIKVGNPKEPKPSENDDLNLYFGLYEVFTPPIKALNQSNRKNVYFLTIGFHQILNYKRGKPKALLKRRIFPF 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11476385 11481682 - ClG42_01g0094600.10 Clacu01g0946 240330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0946 206 Pfam Phloem protein 2 18 161 IPR025886 -
Clacu01g0946 206 PANTHER F-BOX DOMAIN-CONTAINING PROTEIN 17 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0946 Clacu-Chr1:11476385 Clacu01g0952 Clacu-Chr1:11917816 5.30E-37 dispersed
Clacu01g0944 Clacu-Chr1:11469368 Clacu01g0946 Clacu-Chr1:11476385 2.40E-30 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0946 - - - 0.0