Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0952 ATGGCTAACTTTGCAAAACCCCATTATGATGCTGATCCAAGGGCCGTAGAAACTATCAAGGGCTGCAGAACTGTATTTTATCCGAGAGCATTCAACATCACATGGGGCAATGACAATCGCCATTGGCGTTTTCCTCGTCAAAGCATTAATTTGAAGGATCCAAAATCAGCTGTGCAACTATTGCAAGTGAGTTGGCTAGAAGTGACTTGTTCAACAGACAATGTGGAGGCTGGCAAGACCTATAAAGTGGGCTTCAATTTATCACTTCAACCAGATGCATTTGGGTGGAATGAGCTTGAAGTTTTCATAATGGCCAAGGTTGGAAAAAAGGGAAACTACATTTTCAAGAAGACTAATCTTGGGAACAAACCTACAAACTCTACAAAGTTTAGTGTTCCCGAGGAGGGTTTGGAAATGGAAGTTGTTGCACCACCAAGCTCCCCAGGAGATTGGAGGCTCTATTTTGGACTTTATGAAGTTTGGAGTGGCAAATGGAAGGGAGGCCTGCAGATTCATAATGCTTTTGTTGAGAAAGTTTGA 540 42.59 MANFAKPHYDADPRAVETIKGCRTVFYPRAFNITWGNDNRHWRFPRQSINLKDPKSAVQLLQVSWLEVTCSTDNVEAGKTYKVGFNLSLQPDAFGWNELEVFIMAKVGKKGNYIFKKTNLGNKPTNSTKFSVPEEGLEMEVVAPPSSPGDWRLYFGLYEVWSGKWKGGLQIHNAFVEKV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11917816 11919254 + ClG42_01g0095200.10 Clacu01g0952 240336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0952 179 PANTHER F-BOX DOMAIN-CONTAINING PROTEIN 23 174 - -
Clacu01g0952 179 Pfam Phloem protein 2 25 173 IPR025886 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0944 Clacu-Chr1:11469368 Clacu01g0952 Clacu-Chr1:11917816 3.40E-48 dispersed
Clacu01g0946 Clacu-Chr1:11476385 Clacu01g0952 Clacu-Chr1:11917816 5.30E-37 dispersed
Clacu01g0950 Clacu-Chr1:11755273 Clacu01g0952 Clacu-Chr1:11917816 9.20E-57 dispersed
Clacu01g0952 Clacu-Chr1:11917816 Clacu01g2665 Clacu-Chr1:36789135 2.90E-31 dispersed
Clacu01g0951 Clacu-Chr1:11870280 Clacu01g0952 Clacu-Chr1:11917816 1.10E-65 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0952 - - - 0.0