Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0983 ATGGCGCGAAAATCTTCTCTCCTCAAGCGAACCCTAGCTTCTCTCTGCTTTATTCTGGCCCTATATGCCATTGTTAACACCTTCATCAGCTCCACAGCCACTCTCAAGCTCGACCGCTCCTTCCCCTTCAGCACTGCCAATTCCGTTATGGTCTCCGAAGAATTTGGTTCCCAAGACACTGATCTCCTCAACACCTCTGCGAAATTCGTCTCTCCGGTCAAGATTTACCTTTACGATGTGCCCACCAGGTTTACGTACGGTGTAATTGAGAACCACGGCATAGCGCGCGGAGGAAAATCCGTCCCTAAAGTCACGGACCTTAAGTATCCAGGCCATCAGCATATGGCCGAGTGGTATCTGTTCACGGATCTGCTTCGACCGGAGTCGGAGCGTATTGGGTCTGCTGTGGTTAGGGTTTTCGATCCGGAGGAAGCGGATTTGTATTATGTACCGTTCTTCTCGTCCTTAAGCTTGATCGTCAACCCTATCCGACCTGCAACGGGGTCGGATCAGCAGCAACGGAAGCTTGTGTACAGTGACGAGGAGACGCAGGATGCCTTCATGGAGTGGTTGGAGAAGCAGGAGTACTGGAAGCGGAACTATGGGCGGGATCACGTCATTGTAGCGCAGGACCCTAATGCATTGTACAGGGTGATTGATAGGGTTAAGAACAGTATCTTGCTCGTTTCGGATTTCGGCCGGTTGAGGGCTGACCAAGCCTCGCTAGTTAAGGACGTGATTGTACCATACTCCCATAGGATCAATACTTATAATGGTGACATCGGAGTTGAGAATCGCAAAACTTTATTGTTCTTCATGGGCAATCGATTCCGTAAAGAGGGAGGAAAGATACGTGATATGCTTTTCGATATTCTTGAGGAAGAACGGGATGTCATAATCAAACATGGAACACAATCACGAGAGAGCCGGCGTGCTGCTACACATGGGATGCATACATCTAAGTTCTGCTTGAATCCAGCTGGTGACACTCCCTCTGCGTGTCGACTTTTTGATTCTGTAGTAAGCTTATGTGTACCAGTGATTGTCAGCGATAGTATTGAGTTGCCTTTCGAAGATGTTATAGATTACTCCAAGATTGCGGTGTTTTTTGATTCGGTTTCTGCTGTGAAACCTGGATTTCTGATTTCAAAGCTGAGGAGAATATCCAAAGAGAGGATTCTGGAGTATCAGAGAGAAATGAAAAAGATAAAGAGATACTTTGAGTATACAGACTCAAATGGCACAGTGAACGAAATATGGCGCCAAGTCTCACAGAAGTTACCTCTAATTAAGCTAATGATTAATCGCGGAAGGAGGCTCATTCATGGAGATGGTGATGAACCAGACTGCTCTTGTCTCTGTTCAAACCAAACTGGCATCAGGGCTAGACTATAA 1395 46.88 MARKSSLLKRTLASLCFILALYAIVNTFISSTATLKLDRSFPFSTANSVMVSEEFGSQDTDLLNTSAKFVSPVKIYLYDVPTRFTYGVIENHGIARGGKSVPKVTDLKYPGHQHMAEWYLFTDLLRPESERIGSAVVRVFDPEEADLYYVPFFSSLSLIVNPIRPATGSDQQQRKLVYSDEETQDAFMEWLEKQEYWKRNYGRDHVIVAQDPNALYRVIDRVKNSILLVSDFGRLRADQASLVKDVIVPYSHRINTYNGDIGVENRKTLLFFMGNRFRKEGGKIRDMLFDILEEERDVIIKHGTQSRESRRAATHGMHTSKFCLNPAGDTPSACRLFDSVVSLCVPVIVSDSIELPFEDVIDYSKIAVFFDSVSAVKPGFLISKLRRISKERILEYQREMKKIKRYFEYTDSNGTVNEIWRQVSQKLPLIKLMINRGRRLIHGDGDEPDCSCLCSNQTGIRARL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12829335 12833429 - ClG42_01g0098300.10 Clacu01g0983 240367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0983 464 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 61 423 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
Clacu01g0983 464 Pfam Exostosin family 71 384 IPR040911 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0983 Clacu-Chr1:12829335 Clacu09g1064 Clacu-Chr9:10111890 4.80E-70 dispersed
Clacu01g0983 Clacu-Chr1:12829335 Clacu08g1164 Clacu-Chr8:21655512 4.50E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0983 K23200 - csv:101216577 871.307