Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0988 ATGGCTCTGCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGATTGTATTCCATTTACTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGGAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGGAGTTCATCCCACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTGCCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATTACTGCTACTTCATACACCGTTGCTTCCCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTCACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCGGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGTGATGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGATGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCTGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 44.19 MALRDFLFLFFFLIFDCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLEKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTRMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12894534 12899746 - ClG42_01g0098800.10 Clacu01g0988 240372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0988 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Clacu01g0988 711 CDD STKc_IRAK 409 680 - -
Clacu01g0988 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0988 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Clacu01g0988 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Clacu01g0988 711 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515(InterPro)
Clacu01g0988 711 SUPERFAMILY L domain-like 25 232 - -
Clacu01g0988 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Clacu01g0988 711 MobiDBLite consensus disorder prediction 244 263 - -
Clacu01g0988 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Clacu01g0988 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0988 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Clacu01g0988 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Clacu01g0988 711 MobiDBLite consensus disorder prediction 264 286 - -
Clacu01g0988 711 MobiDBLite consensus disorder prediction 240 286 - -
Clacu01g0988 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Clacu01g0988 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
Clacu01g0988 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Clacu01g0988 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0988 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0988 Clacu-Chr1:12894534 Clacu08g0628 Clacu-Chr8:14696926 4.20E-134 dispersed
Clacu10g1751 Clacu-Chr10:31044514 Clacu01g0988 Clacu-Chr1:12894534 1.30E-70 dispersed
Clacu01g0988 Clacu-Chr1:12894534 Clacu07g1427 Clacu-Chr7:29013938 1.20E-133 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu01g0988 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.3e-84 311.2
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu09g0150 . 109 803 Strubbelig Receptor Gene Family AT1G53730 61.1 1.7e-183 639.8
Clacu07g1427 . 103 916 Strubbelig Receptor Gene Family AT1G53730 51.0 3.2e-182 635.6
Clacu08g0628 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Clacu01g0988 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.4e-147 518.8
Clacu09g0150 . 109 793 Strubbelig Receptor Gene Family AT3G14350 55.5 2.2e-164 576.2
Clacu01g0988 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Clacu07g1427 . 595 923 Strubbelig Receptor Gene Family AT4G22130 63.4 4.7e-120 428.7
Clacu09g0150 . 482 795 Strubbelig Receptor Gene Family AT4G22130 64.6 6.4e-117 418.3
Clacu02g0132 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Clacu08g0628 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Clacu10g1722 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.2e-92 334.7
Clacu01g2355 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73240 PF00069 Pkinase 6.10E-44 CL0016 Clacu PK