Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1020 ATGGATAATAGGAAGATGGGAAAAAGGTTTGAGGGGAAGGTCGCCATTGTTACTGCTTCAACTCAAGGTATCGGCTTCCAAATTGCTCAGCGTCTCGCCTTGGAAGGTGCCTCCGTCGTTATTTCTTCCCGTAGACAGAAAAACGTTGATGAGGCAATTGAAAAACTCAAAGCTCAAGGACTTGAAGTGTTAGGGATTGTTTGTCATGTATCAAATGCACAGCAAAGGAAGAATCTGGTGGAAAAGACTATCCAGAAATATGGAAAAATAGACGTGGTTGTATCGAATGCAGCTGTCAATCCATCAGTCGAATCCATCTTGCGAACTCAAGAATCTGTCCTTGACAAGTTGTGGGACATAAATGTTAAAGCTTCGGTCCTCCTTTTGCAGGAAGTAGCTCCTCACTTGCAAAAAGGCTCTTCAGTTGTTCTTATTTCCTCCATTGAAGGATTCCAGCCTTCTGCCTTATTGGCCATGTATGGGGTGACAAAAACAGCCCTTCTTGGACTGACAAAGGCTCTTGCTGCAGAGATGGCCCCTGACACTCGTGTAAACTGTGTCGCTCCTGGTTTCGTGCCAACACACTTTGCTGATTTCCTTGTGTCTAATGAAGCCGTTAAAAAGGGAGTTGAGTCAAAGACTTTACTCAACCGGCTTGGTACGACTGAAGACATGGCTGCTGCCACTGCCTTTCTGGCATCGGATGATGCTTCGTATATTACCGGCGAAACTCTGGTTGTAGCTGGGGGGATGCCTTCCAGACTCTAG 768 45.96 MDNRKMGKRFEGKVAIVTASTQGIGFQIAQRLALEGASVVISSRRQKNVDEAIEKLKAQGLEVLGIVCHVSNAQQRKNLVEKTIQKYGKIDVVVSNAAVNPSVESILRTQESVLDKLWDINVKASVLLLQEVAPHLQKGSSVVLISSIEGFQPSALLAMYGVTKTALLGLTKALAAEMAPDTRVNCVAPGFVPTHFADFLVSNEAVKKGVESKTLLNRLGTTEDMAAATAFLASDDASYITGETLVVAGGMPSRL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13807617 13811039 + ClG42_01g0102000.10 Clacu01g1020 240404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1020 255 Pfam Enoyl-(Acyl carrier protein) reductase 19 251 - -
Clacu01g1020 255 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Clacu01g1020 255 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Clacu01g1020 255 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Clacu01g1020 255 PANTHER DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 5 255 - -
Clacu01g1020 255 FunFam Short-chain dehydrogenase reductase 2 254 - -
Clacu01g1020 255 Gene3D - 2 253 - -
Clacu01g1020 255 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 251 IPR036291 -
Clacu01g1020 255 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491(InterPro)
Clacu01g1020 255 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Clacu01g1020 255 PRINTS Glucose/ribitol dehydrogenase family signature 215 235 IPR002347 -
Clacu01g1020 255 PRINTS Glucose/ribitol dehydrogenase family signature 14 31 IPR002347 -
Clacu01g1020 255 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Clacu01g1020 255 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Clacu01g1020 255 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1020 Clacu-Chr1:13807617 Clacu05g0871 Clacu-Chr5:7630672 3.50E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1020 K11147 - csv:101214017 442.195