Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1048 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 657 47.49 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNNAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14887135 14887791 + ClG42_01g0104800.10 Clacu01g1048 240432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1048 218 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g1048 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Clacu01g1048 218 Coils Coil 87 114 - -
Clacu01g1048 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 Gene3D - 13 112 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Clacu01g1048 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1048 Clacu-Chr1:14887135 Clacu03g1822 Clacu-Chr3:32000027 3.20E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47004 PF00319 SRF-TF 4.50E-17 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1048 - - - 0.0