Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1048 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTTACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAAGGCAAGAAGATGGTCAACCAAGAGACGTTCCTCCGCGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTACGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATAGTTGATATTAATAAAAGGATGGGGTTGCTTACCGCGAAGCAACCACCGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATAATGCCTTTTTCCCTTGA 657 47.49 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQGKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGATPPPDLNVIDLNDLGWLVDQTIVDINKRMGLLTAKQPPRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNNAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14887135 14887791 + ClG42_01g0104800.10 Clacu01g1048 240432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1048 218 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g1048 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Clacu01g1048 218 Coils Coil 87 114 - -
Clacu01g1048 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 Gene3D - 13 112 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g1048 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Clacu01g1048 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1048 Clacu-Chr1:14887135 Clacu03g1822 Clacu-Chr3:32000027 3.20E-64 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47004 PF00319 SRF-TF 4.50E-17 No_clan Clacu TF