Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1050 ATGGCCATCTCCATTGCCTTCTCGACGAACACCCACTTCCCATTTTCTACAATTTGCAGATCAATTTCCTCTCTCAGTCCATCCGTCGATGTTCTTTTTAACGCCAGGAGAGATTGCAATCGTGGGTTTCCTCTAATTAGAACATTGGACACCAAATTGGCAAAAACCAGGGCTGCATTGTCTGAAAATTCTTACCGCAAGCAGTACCCAAAAGTGGGTGCCAAATCTATTGGACCCATTCCACCTGCCCAGCTAATTCAAGTCGTTGAGAATGCTGCCAAGACAGGAGCCGAGGTGGTGATGGATGCTGTTAATAAGCCTCGGAATATTGAATATAAAGGATTGGCGGACTTAGTAACGGAAACAGATAAAATGAGTGAGGCTGCTATTCTGGAAGTCGTTAGAAAGAACTTTAGAGATCACCTCATCCTTGGAGAAGAGGGAGGAGTTATAGGGGATTCATCATCTGATTATCTTTGGTGCATTGATCCTTTAGATGGAACAACAAATTTTGCACATGGCTATCCTTCCTTTGCAGTATCTGTCGGAGTTTTATTTCGGGGAAATCCTGCTGCTGCAGCTGTGGTAGAGTTTGTTGGGGGTCCTATGTGCTGGAACACTCGCATATTTACTGCAACTGCTGGTGGGGGAGCATTCTGTAATGGCCAAAAGATTAATGTGAGTCAAACTAGCCAGGTGGAACGATCTCTTCTAGTTACAGGATTTGGATACGAACATGATGATCCATGGGCTACAAATATGGATTTATTTAAAGAATTCACAGATGTCAGCAGGGGAGTAAGAAGGCTCGGTGCAGCAGCAGTCGACATGAGCCATGTAGCTCTAGGAATTGTAGAAGCATATTGGGAGTATCGCCTGAAGCCATGGGATATGGCTGCAGGTGTTTTGATAGTTGAAGAAGCAGGTGGAGCAGTGACTCGCATGGATGGTGGAAAGTTCAGTGTCTTTGATAGATCTGTTTTGGTTTCTAATGGTGTTGTACATGACAAGCTTTTGGAGAAAATTGGTTGTGCAACCGAAAAACTAAAAAGCAAAGGAATTGATTTCTCATTGTGGTATAAACCAGAAAACTACCAGACAGATCTTTGA 1110 43.6 MAISIAFSTNTHFPFSTICRSISSLSPSVDVLFNARRDCNRGFPLIRTLDTKLAKTRAALSENSYRKQYPKVGAKSIGPIPPAQLIQVVENAAKTGAEVVMDAVNKPRNIEYKGLADLVTETDKMSEAAILEVVRKNFRDHLILGEEGGVIGDSSSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFRGNPAAAAVVEFVGGPMCWNTRIFTATAGGGAFCNGQKINVSQTSQVERSLLVTGFGYEHDDPWATNMDLFKEFTDVSRGVRRLGAAAVDMSHVALGIVEAYWEYRLKPWDMAAGVLIVEEAGGAVTRMDGGKFSVFDRSVLVSNGVVHDKLLEKIGCATEKLKSKGIDFSLWYKPENYQTDL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14924837 14932671 - ClG42_01g0105000.10 Clacu01g1050 240434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1050 369 Gene3D - 83 225 - -
Clacu01g1050 369 FunFam Inositol-1-monophosphatase 226 355 - -
Clacu01g1050 369 SUPERFAMILY Carbohydrate phosphatase 84 342 - -
Clacu01g1050 369 ProSitePatterns Inositol monophosphatase family signature 1. 160 173 IPR020583 -
Clacu01g1050 369 Gene3D - 226 349 - -
Clacu01g1050 369 PRINTS Inositol monophosphatase superfamily signature 117 137 IPR000760 -
Clacu01g1050 369 PRINTS Inositol monophosphatase superfamily signature 215 238 IPR000760 -
Clacu01g1050 369 PRINTS Inositol monophosphatase superfamily signature 293 317 IPR000760 -
Clacu01g1050 369 PRINTS Inositol monophosphatase superfamily signature 262 283 IPR000760 -
Clacu01g1050 369 PRINTS Inositol monophosphatase superfamily signature 139 155 IPR000760 -
Clacu01g1050 369 PRINTS Inositol monophosphatase superfamily signature 160 176 IPR000760 -
Clacu01g1050 369 FunFam Inositol-1-monophosphatase 82 225 - -
Clacu01g1050 369 PANTHER INOSITOL MONOPHOSPHATASE 84 344 - GO:0006020(PANTHER)|GO:0007165(PANTHER)|GO:0008934(PANTHER)|GO:0046855(PANTHER)
Clacu01g1050 369 CDD IMPase 85 331 IPR033942 GO:0008934(InterPro)
Clacu01g1050 369 Pfam Inositol monophosphatase family 84 342 IPR000760 -
Clacu01g1050 369 ProSitePatterns Inositol monophosphatase family signature 2. 296 310 IPR020550 GO:0046854(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1050 Clacu-Chr1:14924837 Clacu01g1068 Clacu-Chr1:15411775 1.30E-33 dispersed
Clacu11g0557 Clacu-Chr11:5247534 Clacu01g1050 Clacu-Chr1:14924837 2.30E-19 transposed
Clacu01g1050 Clacu-Chr1:14924837 Clacu01g2215 Clacu-Chr1:33420479 1.90E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1050 K01092 - csv:101218450 695.271