Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1095 ATGATGAAGCAAGTAGCAGAAAATGTTCCAGGTTACATGGGGGGATGGTGGGAGGGGAAAGAAATCAGTTGCTTGAAGTTACAAAATCTGACTTCACTTCTCACCTCTATAAAATGGCTTCTCCACTCTCTAAACCACTCAGCCCCTTTAGCTCACACAAAGAAAGAGAAAAGAGAGGAAGAGAGAAAGAGAGAAAGAGAAGTGAGAGCTATGGCTGCTGGTGGTGATTTCTTGCCCCCCTTGGTTATGCTGGTTGTCCAATTCCTATATGCAGGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAACCCACTAGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCATACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCCACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGCTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCAAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGACGGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTATGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATTGTGGCTATCTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTCGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATATGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGCGGCGGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAACTTAATGATTCTTTGGACAAGTATTAGAGAAGAAGCAACTTCTCCAACAGGTAACTCGGATGCATCAAAGAGATATGGTATATACATTCAACAGAGTCCGAGAGGAGCCTCCTACATGTCCACAGTTTTCAATGTAAAAGGAGTTCTAGCATCAAAGAGACCTCAAATGTAA 1491 45.54 MMKQVAENVPGYMGGWWEGKEISCLKLQNLTSLLTSIKWLLHSLNHSAPLAHTKKEKREEERKREREVRAMAAGGDFLPPLVMLVVQFLYAGLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMAAAAEAKLDDCNNKDLEEQSYVVSNATILHNLMILWTSIREEATSPTGNSDASKRYGIYIQQSPRGASYMSTVFNVKGVLASKRPQM 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16150223 16154651 + ClG42_01g0109500.10 Clacu01g1095 240479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1095 496 Pfam EamA-like transporter family 81 220 IPR000620 GO:0016020(InterPro)
Clacu01g1095 496 Pfam EamA-like transporter family 255 394 IPR000620 GO:0016020(InterPro)
Clacu01g1095 496 PANTHER WAT1-RELATED PROTEIN 81 416 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu01g1095 496 Coils Coil 403 423 - -
Clacu01g1095 496 SUPERFAMILY Multidrug resistance efflux transporter EmrE 312 398 - -
Clacu01g1095 496 Coils Coil 50 70 - -
Clacu01g1095 496 SUPERFAMILY Multidrug resistance efflux transporter EmrE 113 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1095 Clacu-Chr1:16150223 Clacu02g1517 Clacu-Chr2:28630346 6.60E-118 dispersed
Clacu01g1095 Clacu-Chr1:16150223 Clacu11g1749 Clacu-Chr11:28669297 5.90E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1095 - - - 0.0