Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1112 ATGGGACCCCTTTTGCCATTTCCTATCATTATCGATGTTCTTGGGTTTGATCCTTTCGAAGTGGATCGTTCATGCAGCGGATTGATTTCGTGTAGTGGGTTGCGGGAAAATGGTGGCTTGTTCATGGCGAGTGGCATTGACCTGTGTAATGTGCCTGAGGAAGGGTATGTTTCGCCAGTTTCTGCCTGTGGATTAGTATCATGTGATGGAATTTTTATGTTGAAGAGCTTTATTGATTTTCTGATGGACTCTGGTGATGTTGAGCAATCCTTGCTTCCTAAGCTCTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTAACCGTCATGGTAGTTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATATCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGGGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTAACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAGATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAGCTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATATGGGGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTTGACATTGATCAATCAGGAAACGATAACTCTTGTAGAGCATTGGATGAGGTCGTCCTGCGACATAATCTAGAATCCCTTCACCTGCTCTTACACCATGAACTTCGGTTCCAACTTGGAAACCGCCTCCAAAGGCGACCATTGCCACCAAGAGTACGGCTGTGGAGGCAAAGAGAGGCCAAAAGAAAGCTAGAATACTTAGAAACCGAGGAGCTGCATATACAAACAATGACAGAACCACTGAAACTGCTGCTACAACAGTTATTTGGTCTTTGTGTTGGAGAACCTTTGTTTGAATGTCCATGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAATAGAGAGAGAGAAAACAGAGAGGAATTTGCTATAAGTGATGATGATTCCTATGAGTCTCTCCTTTTCTGGTAA 1635 41.9 MGPLLPFPIIIDVLGFDPFEVDRSCSGLISCSGLRENGGLFMASGIDLCNVPEEGYVSPVSACGLVSCDGIFMLKSFIDFLMDSGDVEQSLLPKLSDSDKRKSLQRRKSNRHGSFSHSVENNNQPQNYDVISHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGALFLTVVEKLEFIDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGNDNSCRALDEVVLRHNLESLHLLLHHELRFQLGNRLQRRPLPPRVRLWRQREAKRKLEYLETEELHIQTMTEPLKLLLQQLFGLCVGEPLFECPWRRRRRRRRRRRRRNRERENREEFAISDDDSYESLLFW 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16392850 16396391 + ClG42_01g0111200.10 Clacu01g1112 240496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1112 544 MobiDBLite consensus disorder prediction 98 122 - -
Clacu01g1112 544 Pfam Ion channel 149 229 IPR013099 -
Clacu01g1112 544 Pfam Ion channel 273 341 IPR013099 -
Clacu01g1112 544 Gene3D - 239 353 - -
Clacu01g1112 544 SUPERFAMILY EF-hand 354 412 IPR011992 -
Clacu01g1112 544 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 141 427 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Clacu01g1112 544 SUPERFAMILY Voltage-gated potassium channels 259 343 - -
Clacu01g1112 544 SUPERFAMILY Voltage-gated potassium channels 139 243 - -
Clacu01g1112 544 PRINTS Two pore domain K+ channel signature 302 311 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu01g1112 544 PRINTS Two pore domain K+ channel signature 185 213 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu01g1112 544 Gene3D - 138 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1112 Clacu-Chr1:16392850 Clacu09g2146 Clacu-Chr9:36219366 4.90E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1112 K05389 - csv:101214791 610.527