Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1183 ATGAAGATATCTAATTCCATCTTTATTTTATTTTCATTATTCCTTTTGTTAATATCACCTGCCATTGCTGCTAAAAAGTCATATGTTGTGATATTGGGATCCCATTCACATGGGTTAGAAGTTACTGAGGAAGATCTTGAAAGGGTGGTTCATTCCCATCACAAATTGCTTGGATCCTTCTTGGGCAGTGATGAGAAGGCAAAAGAGGCCATATTTTACTCCTATAAGAAGCATATTAACGGCTTTGCAGCCATTCTGGACGAGGAAGACGCAACCCAACTTGCAAATCATCCCGAGGTAGCAGCAGTATTGCCAAACAGAGCGAAAGAATTACACACAACACATTCATGGGAATTTATGCATTTGGAGAAGAATGGGGTGATTCCTCCTTCTTCTCCTTGGCACAGGGCTAAATCTGGAAAAGATGTCATTATTGCCAACCTTGACACTGGTGTATGGCCAGAGTCCAAGAGTTTTGGAGAACATGGCATAGTTGGACCTGTTCCATCAAAGTGGAAAGGAGGTTGCACTGATAAAACCCCTGATCGAGTGCCTTGTAACAGGAAATTAATCGGAGCAAAGTACTTCAACAAGGGATTCCTGGCCTACTTGAAATCTGAAAATTATACGGACCTCTCATCTGTCATCAACTCCACTCGCGACTACGAAGGTCATGGGTCTCACACCTTGTCCACGGCCGGGGGTAGCTACGTGTCTGGTGCCAGCGTGTTTGGGTCGGGTGTCGGAACTGCCAAAGGTGGATCTCCCAAGGCTCGCGTTGCTGCCTACAAGGTCTGCTGGCCACTTGAGGGTGGTGGGTGCTTCGATGCCGACATCGCCGAGGCATTTGACCATGCCATCGATGATGGTGTCGATGTTCTTTCACTCTCCCTCGGCGGCGATCCAGCCGATTACTTTGGCGATTCCATTGCCATTGCCTCTTTCCATGCAATGAAGAAGGGTATCCCTGTGGTGTGCTCTGCCGGCAACTCCGGCCCTGATGCCTGGACTGTTTCTAATACTGCACCTTGGATTTTGACGGTTGCTGCAAGTACTTTAGACCGTGAGTTTCAGGCTCCTGTTGAGCTCCAAAATGGCCATCGTTACATGGGTTCGAGCCTTTCGAAAGCATTGAGAGAAAAGAAGTTGTACCCATTGATTACGGGAGCTCAGGCGAAAACAAAGAACGCCACAGCGGATGAGGCCATGCTTTGCAAGCCGGAAACATTGGATCATTCAAAAGTAAAAGGGAAGATAGTGGCTTGCTTGAGAGGAGACAATGCAAGAGTGGACAAAGGAGAAGAAGCTGCTCTTGCCGGTGCTGCCGGAATGATTCTATGCAACGATATGCTTAGTGGATTTGAAACCATTGCTGATCCCCATGTTCTTCCAGCTTCCCATATCAATTACAATGACGGCCAAGCTGTTCTCTCTTACATCAATTCCACCAAAAATCCAATGGGTTATTTAATCCCACCATCGGCTAAAGTTAACACCAAGCCTGCTCCCTCTATGGCGGCCTTCTCATCTCGAGGACCCAACTTTATTTCACCCGAGATTATCAAGCCGGATGTGACTGCACCTGGCGTAAACATAATCGCCGCATTCTCAGAAGCCGTAAGCCCAACAGGTGAGGCATTCGACAACAGAACGGCTCCATTCATAACAATGTCAGGCACCTCCATGTCTTGCCCACACGTGGCAGGCCTGGTTGGCCTCCTCCGAACTCTCCACCCTCACTGGAGCCCTTCTGCCATCAAATCTGCCATCATGACCTCTGCCAGGGTTCTTGACAACACAATGAAACCCATGCTTGACGGTGGCTCCCCTGACCTCGCCCCTGCCACCCCCTTCGCCTACGGCTCCGGCCACATTCGCCCCGTGGGAGCCATCGACCCTGGCCTCGTCTATGACCTCTCACCCAACGACTACTTGGAATTCCTCTGCGCTAGCGGGTACGATGTGAAGAGCATTCGGGCATTCTCTGACGGCCCTTTCAACTGCCCTGCCTCTGCTTCTATTTTGAACTTCAATTACCCCTCCATTGGGGTTCAGAATTTGAATGGAAGTGTCACCCTCACTAGGAAGCTGAAGAACGTTGGCACTCCTGGGGTTTACAGACCCAAAATTCTCCACCCGGATGGAGTTAAAGTTTCACTGAAGCCTAGAGTTCTCAAGTTTGAGAGAGTTGCAGAGGAGAAGAGCTTTGAATTGACCATCACCGGAGCTGTGCCACAGAATCAGGTTGTTAACGGCGTGTTGATTTGGACGGACGGCAAGCACTTTGTTAGAAGTCCCATTCTCGTTTCTTCTAACTTGTTCTGA 2325 49.03 MKISNSIFILFSLFLLLISPAIAAKKSYVVILGSHSHGLEVTEEDLERVVHSHHKLLGSFLGSDEKAKEAIFYSYKKHINGFAAILDEEDATQLANHPEVAAVLPNRAKELHTTHSWEFMHLEKNGVIPPSSPWHRAKSGKDVIIANLDTGVWPESKSFGEHGIVGPVPSKWKGGCTDKTPDRVPCNRKLIGAKYFNKGFLAYLKSENYTDLSSVINSTRDYEGHGSHTLSTAGGSYVSGASVFGSGVGTAKGGSPKARVAAYKVCWPLEGGGCFDADIAEAFDHAIDDGVDVLSLSLGGDPADYFGDSIAIASFHAMKKGIPVVCSAGNSGPDAWTVSNTAPWILTVAASTLDREFQAPVELQNGHRYMGSSLSKALREKKLYPLITGAQAKTKNATADEAMLCKPETLDHSKVKGKIVACLRGDNARVDKGEEAALAGAAGMILCNDMLSGFETIADPHVLPASHINYNDGQAVLSYINSTKNPMGYLIPPSAKVNTKPAPSMAAFSSRGPNFISPEIIKPDVTAPGVNIIAAFSEAVSPTGEAFDNRTAPFITMSGTSMSCPHVAGLVGLLRTLHPHWSPSAIKSAIMTSARVLDNTMKPMLDGGSPDLAPATPFAYGSGHIRPVGAIDPGLVYDLSPNDYLEFLCASGYDVKSIRAFSDGPFNCPASASILNFNYPSIGVQNLNGSVTLTRKLKNVGTPGVYRPKILHPDGVKVSLKPRVLKFERVAEEKSFELTITGAVPQNQVVNGVLIWTDGKHFVRSPILVSSNLF 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17926655 17930556 + ClG42_01g0118300.10 Clacu01g1183 240567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1183 774 FunFam subtilisin-like protease SBT1.5 354 497 - -
Clacu01g1183 774 Gene3D - 354 498 - -
Clacu01g1183 774 SUPERFAMILY PA domain 412 483 IPR046450 -
Clacu01g1183 774 Gene3D Peptidase S8/S53 domain 142 644 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g1183 774 Gene3D - 648 772 - -
Clacu01g1183 774 Pfam Fibronectin type-III domain 676 769 IPR041469 -
Clacu01g1183 774 Pfam PA domain 401 475 IPR003137 -
Clacu01g1183 774 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 112 IPR037045 -
Clacu01g1183 774 ProSiteProfiles Serine proteases, subtilase domain profile. 116 631 - -
Clacu01g1183 774 Pfam Subtilase family 140 600 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu01g1183 774 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 53 767 IPR045051 -
Clacu01g1183 774 FunFam Subtilisin-like protease SBT5.3 17 112 - -
Clacu01g1183 774 SUPERFAMILY Subtilisin-like 111 635 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g1183 774 CDD PA_subtilisin_like 361 490 - -
Clacu01g1183 774 CDD Peptidases_S8_3 109 594 IPR034197 -
Clacu01g1183 774 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Clacu01g1183 774 PRINTS Subtilisin serine protease family (S8) signature 221 234 IPR015500 -
Clacu01g1183 774 PRINTS Subtilisin serine protease family (S8) signature 558 574 IPR015500 -
Clacu01g1183 774 Pfam Peptidase inhibitor I9 27 112 IPR010259 -
Clacu01g1183 774 FunFam Subtilisin-like protease SBT1.5 142 367 - -
Clacu01g1183 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 559 569 IPR023828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1183 Clacu-Chr1:17926655 Clacu02g0311 Clacu-Chr2:2823402 1.10E-244 dispersed
Clacu01g1179 Clacu-Chr1:17875065 Clacu01g1183 Clacu-Chr1:17926655 6.20E-62 proximal
Clacu01g1180 Clacu-Chr1:17875578 Clacu01g1183 Clacu-Chr1:17926655 6.40E-119 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1183 - - - 0.0