Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1246 ATGCCAACCAAAATTCCTTTACAGCTACATGGATTACCCATAATATTGTTGCTCCTCAGCTTGGCAGCACCTACCTCCGCTGCCCTCCAGGTGGGATTCTACAAGGGAAAATGTGGCTTTAGAGATGTTGAATCTGTTGTCAGAGACGTTGTCACCGCCGCACTCGAAGGAGATCGAACCCTCGTTGCTGCTCTTCTTCGCTTACACTTCCATGACTGCTTTGTCTCTGGATGTGACGCTTCCCTCCTCCTAGATGGAAGCAATAGCGAGAAGGAAGCTCCTCCAAACTTCAGCGTGCGAGGCTATGATCTCATTGATGCAGTCAAGATTCAGGTTGAGAAGGCATGTCCTCGAGTTGTCTCTTGTGCTGATATCATTGCCATGGCTACTAGAGATGCTGTCAATTGGGCTGGGGGAGGACGATATAGCGTTGAAACCGGACGACGAGATGCCTTCCGACCAGCTGATATTGTCGATCTTCCTGGGCCTTCAATATCTGTCTCAGATTCCATTGCAGCCTTCTCCAAAAGGAACCTTAATGTTACAGATATGGTTTATCTTCTTGGTGGCCACACTGTTGGTGTATCACAATGCATTTTCTTCAAGGATCGCCTCTATAATTACAAAGACACAGGGGGACCGGACCCCACCATCGATCCGTGGTTTCTCAATGACCTACAAAGCCAATGCCCTCAAGATTCCAACGACGACAACACCGTATTTCTTGACCAGAACCGTATGAGTTCTTTCGTCGTTGACAAGTCGTTTCATAGGCAGATATCGCAACAAAGAGGAATATTGGAAATTGATCAACAGCTTGCTTTGGATCCATTGACAAAGGACTTCGTATGGAATGTGGCGTTCCGATCCGACTTCGCCTTCAAGTTTGGACAAGCATTGATCAAGATGGGAAGAATTCAAGTTCTTACTGGCTCAGAAGGGGAGATTAGAAGAACATGTGGGGCTGTTAATTGA 975 46.97 MPTKIPLQLHGLPIILLLLSLAAPTSAALQVGFYKGKCGFRDVESVVRDVVTAALEGDRTLVAALLRLHFHDCFVSGCDASLLLDGSNSEKEAPPNFSVRGYDLIDAVKIQVEKACPRVVSCADIIAMATRDAVNWAGGGRYSVETGRRDAFRPADIVDLPGPSISVSDSIAAFSKRNLNVTDMVYLLGGHTVGVSQCIFFKDRLYNYKDTGGPDPTIDPWFLNDLQSQCPQDSNDDNTVFLDQNRMSSFVVDKSFHRQISQQRGILEIDQQLALDPLTKDFVWNVAFRSDFAFKFGQALIKMGRIQVLTGSEGEIRRTCGAVN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20864889 20869122 - ClG42_01g0124600.10 Clacu01g1246 240630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1246 324 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 Gene3D - 32 324 - -
Clacu01g1246 324 Gene3D Peroxidase, domain 2 161 303 - -
Clacu01g1246 324 FunFam Peroxidase 32 159 - -
Clacu01g1246 324 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 FunFam Peroxidase 161 303 - -
Clacu01g1246 324 PANTHER PEROXIDASE 25-RELATED 25 320 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu01g1246 324 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Clacu01g1246 324 ProSiteProfiles Plant heme peroxidase family profile. 28 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 Pfam Peroxidase 47 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g1246 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Clacu01g1246 324 CDD secretory_peroxidase 29 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu01g1246 324 SUPERFAMILY Heme-dependent peroxidases 29 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1246 Clacu-Chr1:20864889 Clacu09g1599 Clacu-Chr9:27754653 2.40E-68 dispersed
Clacu06g0105 Clacu-Chr6:1162004 Clacu01g1246 Clacu-Chr1:20864889 1.30E-56 transposed
Clacu01g1246 Clacu-Chr1:20864889 Clacu11g0921 Clacu-Chr11:8872742 2.90E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1246 K00430 - csv:101210173 512.301