Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1272 ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTTGTGTCGTCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGGAAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAGTAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTTCACTTAA 1020 42.16 MVYVNPFEDMGLRNHMADDNIFCLQSPTFIEWLKPHNPSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFVSSRCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEVSCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHFT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22008979 22011439 + ClG42_01g0127200.10 Clacu01g1272 240656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1272 339 FunFam Zinc finger protein WIP2 236 318 - -
Clacu01g1272 339 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 266 290 - -
Clacu01g1272 339 Coils Coil 106 126 - -
Clacu01g1272 339 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Clacu01g1272 339 SMART c2h2final6 183 205 IPR013087 -
Clacu01g1272 339 SMART c2h2final6 230 262 IPR013087 -
Clacu01g1272 339 SMART c2h2final6 267 287 IPR013087 -
Clacu01g1272 339 MobiDBLite consensus disorder prediction 316 339 - -
Clacu01g1272 339 Gene3D Classic Zinc Finger 263 322 - -
Clacu01g1272 339 Gene3D Classic Zinc Finger 182 205 - -
Clacu01g1272 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Clacu01g1272 339 Pfam Zinc finger, C2H2 type 183 202 IPR013087 -
Clacu01g1272 339 SUPERFAMILY beta-beta-alpha zinc fingers 169 206 IPR036236 -
Clacu01g1272 339 PANTHER ZINC FINGER PROTEIN WIP2 27 326 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1272 Clacu-Chr1:22008979 Clacu10g1710 Clacu-Chr10:30592900 7.30E-84 dispersed
Clacu01g1272 Clacu-Chr1:22008979 Clacu02g2378 Clacu-Chr2:36800980 2.10E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47010 PF13912 zf-C2H2_6 5.70E-05 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1272 - - - 0.0