Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g1276 | ATGTCGGGCAGCGAATTACTCTTCTCTCTGCCCACCGCAATTTCCCTTCTCTTCTTCTCCTTCACGGCGGCCTTCACGATTTTCTCTTTCTCTCTTTACATCCTCCGCCTTAACCCATGCTGCAATTGCTGTGTTTGCCGCAGCTATCTTTCTTCTTCGTGGTCTTTCTCTTTCCCTAACTTATCAGATTGGTACACTCACCTTCTTTCCCTTTCCCCCACCGCCACCATCCACCTCCACGTCCTCTCCAACATCGTCACCGCCAACCCCGACAACGTCCAACACATCCTCAAATCCAACTTTCATAACTATCCCAAAGGAAAACCATTCTCTTCCATCCTCGGCGACCTTCTCGGTCACGGCATTTTCAACGTCGATGGTCATTCTTGGCGGTTCCAACGCAAGATGGCTAGCTTGGAACTCGGGAGCTTGTCGCTGCGGTCTCACGCTTTCGAGATTTTAACTACTCAGATTCAGACAAGGTTGGTTCCTGTGATGAAGGATGTTGGGGAAGTGGATTTGCAAGATGTGTTTAGGAGGTTTTCGTTTGATAATATTTGTAGATTTTCATTTGGGTTGGATCCGGGGTGTTTAAGGTTGTGTTTGCCCATATCGGAGTTTGCGGTGGCGTTTGATTTGGCGTCGAGGTTATCGGCGGAAAGGGCTATGGCGGCGTCGCCGATTATGTGGAAGATTAAGAGGGTTTTGAGAGTGGGATCGGAGAGGAAGCTTAGGGAAGCTATTAAGATGGTGGATGGGTTAGCGATGGAAGTTATAAGGCAACGGAGGGAGATGGGGTTTTCACATAGGAATGATCTTCTCTCTAGATTCATGGCTTCTACCAATGATGATCGATATCTTAGAGACATTGTTGTTAGCTTTCTCCTCGCCGGTCGGGACACGGTGGCGTCGGCGTTGACTAGCTTATTCTGGCTACTTTCCCAAAACCCGGAAGTAGAGACTAAAATTATCTCCGAGTCAGACCGGATCATGGGACCGGACCGAGACACGGTCCCCAATTTTGACAATCTTAAGGACATGCACTACCTCCAAGCAGCGGTCTACGAAAACATGCGTCTCTTTCCACCCGTTCAGTTCGATTCCAAGTTTGCCGAGGAAGACGACATCTTGCCGGACGGTACATTTGTCCAAAAGGGCACTAGGGTAACTTACCACCCCTACGCCATGGGCCGAATGGACCGGATTTGGGGACCCGATTGTCTCGAGTTCAAACCAGAGAGGTGGCTCAAGAATGGCTACTTTGCGCCCGAAAACCCGTTTAAGTTCCCGGTTTTTCAAGCCGGTTTAAGGGTTTGTTTAGGTAAGGAGCTAGCCGTGATGGACGTGAAATGTGTCGCAGTGGTATTGATTCGGAAGTTTAAGATCCGGTTGGCAGAAGCCGATCGGGTTGCTCGGTTTGCTCCCGGTCTAACGGCTAGCTGGAGAGGTGGGTTACCGGTTCGAATTGAAGAAAGAACCACTTGTTAA | 1488 | 49.53 | MSGSELLFSLPTAISLLFFSFTAAFTIFSFSLYILRLNPCCNCCVCRSYLSSSWSFSFPNLSDWYTHLLSLSPTATIHLHVLSNIVTANPDNVQHILKSNFHNYPKGKPFSSILGDLLGHGIFNVDGHSWRFQRKMASLELGSLSLRSHAFEILTTQIQTRLVPVMKDVGEVDLQDVFRRFSFDNICRFSFGLDPGCLRLCLPISEFAVAFDLASRLSAERAMAASPIMWKIKRVLRVGSERKLREAIKMVDGLAMEVIRQRREMGFSHRNDLLSRFMASTNDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPEVETKIISESDRIMGPDRDTVPNFDNLKDMHYLQAAVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGPDCLEFKPERWLKNGYFAPENPFKFPVFQAGLRVCLGKELAVMDVKCVAVVLIRKFKIRLAEADRVARFAPGLTASWRGGLPVRIEERTTC | 495 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 22650366 | 22653078 | + | ClG42_01g0127600.10 | Clacu01g1276 | 240660 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g1276 | 495 | PANTHER | CYTOCHROME P450 | 38 | 484 | - | - | |
| Clacu01g1276 | 495 | SUPERFAMILY | Cytochrome P450 | 55 | 492 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | E-class P450 group I signature | 306 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | E-class P450 group I signature | 286 | 303 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | CDD | CYP86A | 73 | 485 | - | - | |
| Clacu01g1276 | 495 | PRINTS | P450 superfamily signature | 297 | 314 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | P450 superfamily signature | 439 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | P450 superfamily signature | 352 | 363 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | Gene3D | Cytochrome P450 | 57 | 494 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu01g1276 | 495 | Pfam | Cytochrome P450 | 73 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g1276 | Clacu-Chr1:22650366 | Clacu10g1629 | Clacu-Chr10:29650224 | 2.60E-106 | dispersed | |
| Clacu05g1505 | Clacu-Chr5:18462888 | Clacu01g1276 | Clacu-Chr1:22650366 | 9.30E-99 | transposed | |
| Clacu06g1882 | Clacu-Chr6:29264809 | Clacu01g1276 | Clacu-Chr1:22650366 | 2.90E-114 | transposed | |
| Clacu07g0067 | Clacu-Chr7:1067521 | Clacu01g1276 | Clacu-Chr1:22650366 | 2.00E-101 | transposed | |
| Clacu10g1892 | Clacu-Chr10:32508237 | Clacu01g1276 | Clacu-Chr1:22650366 | 4.80E-177 | transposed | |
| Clacu01g1276 | Clacu-Chr1:22650366 | Clacu11g0946 | Clacu-Chr11:9379073 | 1.90E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g1276 | K20624 | - | csv:101207724 | 887.486 |