Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1302 ATGTTTGCTAAAAATCTCCACTTCTTCTTTTGGCTCTTACTTTCTCTTCTCATTCTTCACTCAACATCATCATCATCATCTATTTCTTCACAAGTGTATATAGTGTACTTAGGGCACAACCGTTTGAGTGATGATGCAACTTTGACCTCCAAATACCATCTTCATCTACTCTCAAAAGTGTTTGCAAGTGAAGAAGGTGGTAAAAGAGCCATGTTGTATAGTTACAAGAAAAGTTTTTCGGGGTTCTCAGCAAAGCTTAATGCAAGCCAAGCAATAGCATTATCAAAGATGGAAGGAGTGATATCCGTATTCGAGAGTAAAACAATGCAACTTCACACAACAAGAAGTTGGGATTTCTTGGGCCTTCCTATAATTCCCTCATATACTAATAATATTAAACCATTATTTCCACTTCGCCTTCCTAGCTATGGCGATCACGATGTTGTTGTTGGCATCTTCGATTCAGGTGTGTGGCCAGAATCTGAAAGTTTCAAGGAGAGTGAGGAGAGGGGGAGACTTCCATGCAATTGGAAAGGCTTCGAAGCCCAATACGGAGCCCTCAACACCACCGCCGGCAACCCCGAGTTCCGCTCCCCTCGAGACTTCTTAGGTCATGGAACTCACACCGCTTCCACTGCGGTGGGTGCGGTCGTGCATAATGTCACCTTCACTACATCTTCATCACTGGCTAAAGGCATTGCCCGAGGTGGGGCTCCCTGGGCCAGGCTGGCAGTGTACAAAGTGTGTTGGGGAAAGGACTACGAGGGCAAGTGCACCGATGCCGACGTCATGGCCGCTTTCGACGACGCTTTGCACGACGGAGTGGACGTCATCTCCGCCTCGTTTGGAGAGACGCCGCCGTTGGCTCCGTTGTTTGAGTCGGCCTCGGCTATTGGCTCATTCCATGCGATGCAGCGGGGAGTGAGCGTGGTGTTCTCTGCTGGGAATGATGGACCCCACCCTTCCCTTGTTCAAAATGTGTCTCCTTGGAGTATTTGTGTTGCTGCTTCTACTATGGATCGAACTTTTCCCACTCCAATACTTATTCACAACCATTTCTCAATCATGGGGGAGAGCTTGATCACAAGAAATATAATAAACGTAAAGCTGGCAGATTCAATCAACTATTTCATAGATGGAATTTGTGAGAGAGACAACATAAGGAAAGGAGGGAAGTCGGGTAAAGGGAAAGTGGTAGTCTGTTTCTCAACCATTGGCCCAGTTTCCATAGGAACTGCACAAGAAGCAGTGAGAGCCATCAATGGCTCCGCTTTAATATTTGGTGCGCCCCCCACGACGGAGCTCCCAGATCTAGATCTCATCCCCACCGTTCGAATTGACATTGCTCAGGCGACTCAAATTCGAAACTTTCTTGCTGAATTACCCAGACTGCCGGCCGTCGAGATCGGCGTCGCGAGAAGTGTGATTGGGAAATCCGTAGCTCCTAGTGTGGCTTACTTTTCATCCAGAGGACCAAGCTCTATCTTACCTGACATTCTCAAGCCAGATATAAGTGCCCCAGGAGTGAACATATTGGCAGCATGGCCTCCGGAAACAGCTCCGACGGTGAGGCCAAGTGGAAGCGTTATTGAAGAAGAAGGTGTAAAATGGAATTTCCAGTCAGGGACTTCAATGTCATGTCCTCATATCTCTGGAGTAGTTGCCCTTATCAAATCTCTTCATCCCCATTGGTCACCTGCCGCCATTAGATCTGCCATCATCACCACAGCCACGAAGAGGGACTCTAGTGGGAATAGCATCCTAGCAGGCGGATCCATGAAACCATCAGACCCATTTGACGTTGGTGCAGGTCAAGTGAACCCCTTAAAGGCCATAAATCCAGGTCTAATCTACGACATCACAACCAGCGATTACATTAGTTTCCTATGCAATATTGGGTATACAGAACAACAAATCAAGATGCTAATTCTCAACCCTTCTCCTCAATTTTGTTGTCCTCCTCAATCCACTACTACCATTAATATTGCAAATCTTAATTATCCGTCAATTACACTTACAAATCTTGGCTCTACCATCACACTCAAAAGAATTGTCCGCAATGTATCACTCAACAAAAACGCCATTTACTTTCTTAGGATTCTTCCTCCCAAGGGAGTCCGAGTACAAGTCTGGCCAAGGATCCTGCTTTTCTCTTGCTTTAGGCAACACCTTTCTTACTATATTACCATAACTCCGCTCAAGAAATCTCGAGGTAGATATGATTTTGGGGAGATTCAATGGTTTAATCGCTTCCATACTGTCACAAGTCCTCTCGTTGTACGTCTTGCCACTTCTACATAA 2301 46.2 MFAKNLHFFFWLLLSLLILHSTSSSSSISSQVYIVYLGHNRLSDDATLTSKYHLHLLSKVFASEEGGKRAMLYSYKKSFSGFSAKLNASQAIALSKMEGVISVFESKTMQLHTTRSWDFLGLPIIPSYTNNIKPLFPLRLPSYGDHDVVVGIFDSGVWPESESFKESEERGRLPCNWKGFEAQYGALNTTAGNPEFRSPRDFLGHGTHTASTAVGAVVHNVTFTTSSSLAKGIARGGAPWARLAVYKVCWGKDYEGKCTDADVMAAFDDALHDGVDVISASFGETPPLAPLFESASAIGSFHAMQRGVSVVFSAGNDGPHPSLVQNVSPWSICVAASTMDRTFPTPILIHNHFSIMGESLITRNIINVKLADSINYFIDGICERDNIRKGGKSGKGKVVVCFSTIGPVSIGTAQEAVRAINGSALIFGAPPTTELPDLDLIPTVRIDIAQATQIRNFLAELPRLPAVEIGVARSVIGKSVAPSVAYFSSRGPSSILPDILKPDISAPGVNILAAWPPETAPTVRPSGSVIEEEGVKWNFQSGTSMSCPHISGVVALIKSLHPHWSPAAIRSAIITTATKRDSSGNSILAGGSMKPSDPFDVGAGQVNPLKAINPGLIYDITTSDYISFLCNIGYTEQQIKMLILNPSPQFCCPPQSTTTINIANLNYPSITLTNLGSTITLKRIVRNVSLNKNAIYFLRILPPKGVRVQVWPRILLFSCFRQHLSYYITITPLKKSRGRYDFGEIQWFNRFHTVTSPLVVRLATST 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23399807 23408127 + ClG42_01g0130200.10 Clacu01g1302 240686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1302 766 PRINTS Subtilisin serine protease family (S8) signature 201 214 IPR015500 -
Clacu01g1302 766 PRINTS Subtilisin serine protease family (S8) signature 541 557 IPR015500 -
Clacu01g1302 766 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
Clacu01g1302 766 CDD Peptidases_S8_3 110 578 IPR034197 -
Clacu01g1302 766 Pfam Subtilase family 146 584 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu01g1302 766 ProSiteProfiles Serine proteases, subtilase domain profile. 116 612 - -
Clacu01g1302 766 ProSitePatterns Serine proteases, subtilase family, serine active site. 542 552 IPR023828 -
Clacu01g1302 766 SUPERFAMILY Subtilisin-like 7 670 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g1302 766 Gene3D - 629 763 - -
Clacu01g1302 766 Pfam Fibronectin type-III domain 664 760 IPR041469 -
Clacu01g1302 766 Gene3D Peptidase S8/S53 domain 147 625 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g1302 766 Pfam Peptidase inhibitor I9 32 112 IPR010259 -
Clacu01g1302 766 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 112 IPR037045 -
Clacu01g1302 766 FunFam Subtilisin-like protease SBT5.3 21 112 - -
Clacu01g1302 766 Gene3D - 340 476 - -
Clacu01g1302 766 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 758 IPR045051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1302 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1302 Clacu-Chr1:23399807 Clacu07g0813 Clacu-Chr7:20617322 2.30E-146 dispersed
Clacu01g1302 Clacu-Chr1:23399807 Clacu09g0110 Clacu-Chr9:1017185 1.60E-118 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu07g0649 . 39 788 Subtilisin-like Serine Gene Family AT1G01900 56.6 3.7e-232 801.6
Clacu07g0648 . 18 777 Subtilisin-like Serine Gene Family AT1G01900 54.3 2.6e-230 795.4
Clacu07g0132 . 12 769 Subtilisin-like Serine Gene Family AT1G04110 67.0 1.2e-312 1068.9
Clacu05g1711 . 3 762 Subtilisin-like Serine Gene Family AT1G20150 53.4 1.3e-224 776.5
Clacu05g1711 . 6 505 Subtilisin-like Serine Gene Family AT1G20160 61.5 7.5e-171 597.4
Clacu08g1226 . 207 664 Subtilisin-like Serine Gene Family AT1G20160 50.3 1.2e-120 430.6
Clacu07g0354 . 32 304 Subtilisin-like Serine Gene Family AT1G20160 50.2 1.8e-68 257.3
Clacu01g2628 . 9 838 Subtilisin-like Serine Gene Family AT1G30600 65.2 1.5e-311 1065.4
Clacu07g0813 . 121 840 Subtilisin-like Serine Gene Family AT1G32940 54.6 5.1e-228 787.7
Clacu07g0813 . 121 840 Subtilisin-like Serine Gene Family AT1G32950 54.2 1.7e-223 772.7
Clacu07g0813 . 97 840 Subtilisin-like Serine Gene Family AT1G32960 54.4 5.3e-231 797.7
Clacu01g0994 . 3 753 Subtilisin-like Serine Gene Family AT1G62340 58.7 1.1e-250 863.2
Clacu02g0311 . 2 736 Subtilisin-like Serine Gene Family AT2G04160 63.2 2.0e-278 955.3
Clacu10g0390 . 3 742 Subtilisin-like Serine Gene Family AT2G04160 58.8 1.7e-261 899.0
Clacu10g0386 . 20 764 Subtilisin-like Serine Gene Family AT2G04160 57.8 1.6e-248 855.9
Clacu10g0388 . 2 706 Subtilisin-like Serine Gene Family AT2G04160 57.4 1.9e-236 815.8
Clacu10g0391 . 7 680 Subtilisin-like Serine Gene Family AT2G04160 60.2 1.2e-235 813.1
Clacu10g0389 . 5 770 Subtilisin-like Serine Gene Family AT2G04160 53.0 3.9e-234 808.1
Clacu10g0395 . 8 703 Subtilisin-like Serine Gene Family AT2G04160 56.7 5.7e-233 804.3
Clacu01g1183 . 5 769 Subtilisin-like Serine Gene Family AT2G04160 53.3 1.4e-231 799.7
Clacu10g0387 . 26 766 Subtilisin-like Serine Gene Family AT2G04160 53.9 2.0e-230 795.8
Clacu03g1549 . 24 763 Subtilisin-like Serine Gene Family AT2G05920 73.5 0.0e+00 1100.5
Clacu01g1803 . 22 761 Subtilisin-like Serine Gene Family AT2G05920 55.6 3.6e-232 801.6
Clacu08g1797 . 38 773 Subtilisin-like Serine Gene Family AT2G05920 55.9 3.4e-222 768.5
Clacu09g0110 . 30 760 Subtilisin-like Serine Gene Family AT2G05920 53.7 1.8e-215 746.1
Clacu05g0898 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 51.9 3.0e-215 745.3
Clacu02g1218 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.5 1.8e-207 719.5
Clacu09g0137 . 28 781 Subtilisin-like Serine Gene Family AT2G05920 51.3 3.9e-202 701.8
Clacu11g1370 . 35 836 Subtilisin-like Serine Gene Family AT2G19170 81.9 0.0e+00 1340.1
Clacu09g0110 . 8 767 Subtilisin-like Serine Gene Family AT3G14067 64.0 7.8e-283 969.9
Clacu01g1803 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 54.1 5.7e-225 777.7
Clacu03g1549 . 23 761 Subtilisin-like Serine Gene Family AT3G14067 54.1 8.5e-221 763.8
Clacu08g1797 . 9 773 Subtilisin-like Serine Gene Family AT3G14067 50.8 1.8e-210 729.6
Clacu09g0137 . 9 787 Subtilisin-like Serine Gene Family AT3G14067 50.3 4.2e-204 708.4
Clacu09g0137 . 31 789 Subtilisin-like Serine Gene Family AT3G14240 77.0 0.0e+00 1207.2
Clacu02g1218 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.8 7.6e-246 847.0
Clacu01g1803 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.5 7.4e-217 750.7
Clacu09g0110 . 29 758 Subtilisin-like Serine Gene Family AT3G14240 51.8 3.8e-213 738.4
Clacu05g0898 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.0e-210 730.3
Clacu03g1549 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 51.1 6.8e-210 727.6
Clacu08g1797 . 40 772 Subtilisin-like Serine Gene Family AT3G14240 50.5 3.0e-202 702.2
Clacu07g0354 . 15 308 Subtilisin-like Serine Gene Family AT3G46840 52.7 5.3e-79 292.7
Clacu07g0354 . 15 308 Subtilisin-like Serine Gene Family AT3G46850 50.5 1.4e-76 284.6
Clacu07g0652 . 12 570 Subtilisin-like Serine Gene Family AT4G00230 61.2 5.9e-198 687.6
Clacu07g0650 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 58.2 2.8e-187 652.1
Clacu04g1044 . 17 540 Subtilisin-like Serine Gene Family AT4G00230 52.1 1.0e-144 510.8
Clacu07g0813 . 121 838 Subtilisin-like Serine Gene Family AT4G10510 53.2 1.9e-222 769.2
Clacu07g0813 . 98 838 Subtilisin-like Serine Gene Family AT4G10520 54.9 2.0e-230 795.8
Clacu07g0813 . 98 838 Subtilisin-like Serine Gene Family AT4G10530 52.6 8.5e-218 753.8
Clacu07g0813 . 76 840 Subtilisin-like Serine Gene Family AT4G10540 53.5 4.6e-235 811.2
Clacu07g0813 . 121 840 Subtilisin-like Serine Gene Family AT4G10550 53.4 2.5e-222 768.8
Clacu07g0354 . 3 305 Subtilisin-like Serine Gene Family AT4G15040 51.2 1.8e-76 284.3
Clacu01g2628 . 12 838 Subtilisin-like Serine Gene Family AT4G20430 68.2 0.0e+00 1138.3
Clacu03g0514 . 1 284 Subtilisin-like Serine Gene Family AT4G21320 78.2 1.2e-132 469.5
Clacu07g0813 . 93 837 Subtilisin-like Serine Gene Family AT4G21650 50.4 4.9e-205 711.4
Clacu01g1302 . 63 765 Subtilisin-like Serine Gene Family AT4G26330 53.3 4.9e-218 754.6
Clacu11g1370 . 30 836 Subtilisin-like Serine Gene Family AT4G30020 81.6 0.0e+00 1335.9
Clacu02g1218 . 15 772 Subtilisin-like Serine Gene Family AT4G34980 74.5 0.0e+00 1151.7
Clacu09g0137 . 16 789 Subtilisin-like Serine Gene Family AT4G34980 53.1 5.8e-230 794.3
Clacu01g1803 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.2 7.9e-211 730.7
Clacu05g0898 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 50.8 1.8e-210 729.6
Clacu03g1549 . 4 757 Subtilisin-like Serine Gene Family AT4G34980 50.4 3.7e-208 721.8
Clacu04g1044 . 1 527 Subtilisin-like Serine Gene Family AT5G03620 60.0 1.6e-179 626.3
Clacu07g0652 . 8 568 Subtilisin-like Serine Gene Family AT5G03620 50.8 2.3e-146 516.2
Clacu07g0650 . 5 566 Subtilisin-like Serine Gene Family AT5G03620 51.3 8.7e-146 514.2
Clacu07g0359 . 4 532 Subtilisin-like Serine Gene Family AT5G03620 51.6 6.3e-144 508.1
Clacu07g0354 . 15 306 Subtilisin-like Serine Gene Family AT5G03620 54.1 2.3e-85 313.5
Clacu06g0922 . 94 853 Subtilisin-like Serine Gene Family AT5G19660 79.8 0.0e+00 1271.1
Clacu01g2628 . 34 612 Subtilisin-like Serine Gene Family AT5G44530 70.8 7.5e-244 840.1
Clacu01g2489 . 77 781 Subtilisin-like Serine Gene Family AT5G45640 52.9 6.6e-202 701.0
Clacu01g2489 . 23 781 Subtilisin-like Serine Gene Family AT5G45650 58.3 3.6e-251 864.8
Clacu05g0898 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 73.8 0.0e+00 1156.7
Clacu01g1803 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.0 7.7e-230 793.9
Clacu08g1797 . 16 773 Subtilisin-like Serine Gene Family AT5G51750 52.1 3.7e-224 775.0
Clacu03g1549 . 22 761 Subtilisin-like Serine Gene Family AT5G51750 51.4 4.2e-220 761.5
Clacu07g0354 . 15 332 Subtilisin-like Serine Gene Family AT5G58820 50.6 6.6e-79 292.4
Clacu07g0354 . 3 309 Subtilisin-like Serine Gene Family AT5G58840 52.1 6.9e-84 308.5
Clacu07g0354 . 15 312 Subtilisin-like Serine Gene Family AT5G59090 50.7 9.9e-78 288.5
Clacu07g0354 . 1 308 Subtilisin-like Serine Gene Family AT5G59120 51.1 6.0e-83 305.8
Clacu07g0354 . 1 308 Subtilisin-like Serine Gene Family AT5G59130 51.1 6.2e-80 295.8
Clacu05g2376 . 37 734 Subtilisin-like Serine Gene Family AT5G59190 50.2 1.3e-188 656.8
Clacu01g0097 . 404 1101 Subtilisin-like Serine Gene Family AT5G59190 50.1 4.7e-186 648.3
Clacu07g0354 . 1 308 Subtilisin-like Serine Gene Family AT5G59190 51.6 6.3e-82 302.4
Clacu01g1183 . 13 770 Subtilisin-like Serine Gene Family AT5G59810 59.5 3.8e-261 897.9
Clacu10g0390 . 3 742 Subtilisin-like Serine Gene Family AT5G59810 61.2 4.2e-260 894.4
Clacu02g0311 . 15 736 Subtilisin-like Serine Gene Family AT5G59810 59.7 1.3e-253 872.8
Clacu10g0391 . 7 680 Subtilisin-like Serine Gene Family AT5G59810 61.9 5.3e-239 824.3
Clacu10g0387 . 1 766 Subtilisin-like Serine Gene Family AT5G59810 55.0 3.9e-234 808.1
Clacu10g0386 . 1 764 Subtilisin-like Serine Gene Family AT5G59810 55.3 5.2e-234 807.7
Clacu10g0395 . 8 703 Subtilisin-like Serine Gene Family AT5G59810 56.0 1.0e-226 783.5
Clacu10g0388 . 1 706 Subtilisin-like Serine Gene Family AT5G59810 55.7 1.2e-225 780.0
Clacu10g0389 . 1 772 Subtilisin-like Serine Gene Family AT5G59810 53.5 3.3e-225 778.5
Clacu01g1803 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1102.4
Clacu08g1797 . 14 774 Subtilisin-like Serine Gene Family AT5G67360 64.9 1.3e-290 995.7
Clacu03g1549 . 27 762 Subtilisin-like Serine Gene Family AT5G67360 56.3 2.8e-232 802.0
Clacu09g0110 . 8 759 Subtilisin-like Serine Gene Family AT5G67360 56.2 3.4e-230 795.0
Clacu05g0898 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.6 9.2e-228 786.9
Clacu09g0137 . 9 784 Subtilisin-like Serine Gene Family AT5G67360 51.6 1.3e-210 729.9
Clacu02g1218 . 13 767 Subtilisin-like Serine Gene Family AT5G67360 51.4 8.6e-210 727.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012068 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30