Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1314 ATGGGCATCATAGACGGTGGCACTCAAACGCAGTCTGCAAATCCGAACATGGGAAGAGAAAAGCCGAAGGTGGTGGTTATTATGGGGCCGACCGGTTCTGGGAAGTCCCGTCTCGCCATCGATTTGGCTTCTCACTTCCCCGTCGAGATCATCAACGCCGACTCTATGCAGGTTTATCGAGGGTTGGACGTTCTCTCTAACAAAGTTCCCCCCGAAGACCAAAATGGAGTACCGCATCATCTTTTAGGTACAGTGAGTCCAGACGTTGAATTCACGGCTAAAGAATTCCGAGATTCTGCCGTTTCTGTGATTGATGACATAATTTCTCGTGGATGCTTGCCAATGATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTTAGCCCGTTTCTTCTGGATGATTCTGCCGAAAATGTTGGTGGAAGTTGCTCCATTTATCCTGGAGATGAAGAGCTGGGTATTGAGTTGAATGAGGGAAGAGATGGTTTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCAGCTAACAGAATCCATCCTAATAACCACAGAAAAATAAATCAATACCTGAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAACGGCTAATGAGAATTGGGGTCAAGCTGATAGTTTCAGATATGATTGCTGCTTGATATGTGTCGATGCTTCTGTTCCACAACTTGATGGACATGTTGATTCTAGAGTTGATAGCATGATGGCTGCTGGATTACTTGATGAGGTTTATGACATTTACAATCCAAATGCAAACTATACTAAAGGAGTGCGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAGTTTTTGAGATATTATGTACCTAAAGGTAGATGTGAAAAAGATAGTGCTGGTCTTAGCCCAAAAAAAATAATGGAGTGCAACGAGATTGAGAATATAAGGTCAATCCTGAATTCACCAAGTAATAGCCAACCCAGTTTGCTACTGAAAGAAGCCATAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAGACTTTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATATAACATGCAAAGTGGAGGATTCATGGACTGCACAAGTCGTTGAACCTGCAGTCCAGATAATTAGGTCTTTCCTTAAAGATGGTTCGGGGACTGAAACAATAAACCCGCATAGTTCAGGGCAAACAATCAAGAAGGACGTGTGGACACAATATATATGCCAGGCTTGTGGGAATAAAGTACTAAGAGGAGCACATGAGTGGGAACAACACAATCAAGGTCGCACACATCGAAAACGAATTTATCGGCTTAAGAAGAAGTGTGAAGGGCCTTCCTTGCTGCAACAGAAACTACCTCTTCAAGAATAA 1422 42.69 MGIIDGGTQTQSANPNMGREKPKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYRGLDVLSNKVPPEDQNGVPHHLLGTVSPDVEFTAKEFRDSAVSVIDDIISRGCLPMIVGGTNYYIQALVSPFLLDDSAENVGGSCSIYPGDEELGIELNEGRDGLKYDHNHLKEIDPVSANRIHPNNHRKINQYLSLYYRTGVLPSTLFQGTANENWGQADSFRYDCCLICVDASVPQLDGHVDSRVDSMMAAGLLDEVYDIYNPNANYTKGVRQAIGVREFEEFLRYYVPKGRCEKDSAGLSPKKIMECNEIENIRSILNSPSNSQPSLLLKEAIDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDSTEYITCKVEDSWTAQVVEPAVQIIRSFLKDGSGTETINPHSSGQTIKKDVWTQYICQACGNKVLRGAHEWEQHNQGRTHRKRIYRLKKKCEGPSLLQQKLPLQE 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23679757 23698621 + ClG42_01g0131400.10 Clacu01g1314 240698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1314 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 23 409 IPR039657 GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER)
Clacu01g1314 473 Gene3D - 151 211 - -
Clacu01g1314 473 Gene3D Classic Zinc Finger 422 461 - -
Clacu01g1314 473 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 24 286 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Clacu01g1314 473 Gene3D - 22 421 IPR027417 -
Clacu01g1314 473 Pfam IPP transferase 57 354 - -
Clacu01g1314 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 130 IPR027417 -
Clacu01g1314 473 Hamap tRNA dimethylallyltransferase [miaA]. 24 398 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
Clacu01g1314 473 FunFam tRNA dimethylallyltransferase 418 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1314 Clacu-Chr1:23679757 Clacu05g0635 Clacu-Chr5:5281412 4.50E-47 dispersed
Clacu01g1314 Clacu-Chr1:23679757 Clacu07g0018 Clacu-Chr7:572773 2.60E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1314 K00791 - csv:101202758 830.861