Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1360 ATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATTCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGCACCCTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTCTACCAAGATCGACTCCAACCCGTGCAGCTCATACCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1053 46.34 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLPRSTPTRAAHTENTTDLYTDTALEAVENGNSPLPSASPH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24895847 24899093 + ClG42_01g0136000.10 Clacu01g1360 240744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1360 350 SMART ring_2 235 275 IPR001841 -
Clacu01g1360 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Clacu01g1360 350 MobiDBLite consensus disorder prediction 297 324 - -
Clacu01g1360 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Clacu01g1360 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Clacu01g1360 350 Pfam Ring finger domain 234 276 IPR001841 -
Clacu01g1360 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 341 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Clacu01g1360 350 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1360 Clacu-Chr1:24895847 Clacu05g0094 Clacu-Chr5:1056048 1.90E-10 dispersed
Clacu08g1443 Clacu-Chr8:24457700 Clacu01g1360 Clacu-Chr1:24895847 7.40E-09 transposed
Clacu01g1360 Clacu-Chr1:24895847 Clacu06g1802 Clacu-Chr6:28499200 1.40E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1360 K16284 - csv:101222360 695.271