Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1361 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTCATGCAATGCTTTTTAACATCTTATCACGGGAAGAGCAGGGGAAAATGACTTCTGTATTCCCTGAAAATGATAAAGATAATTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCACTTTGATGAGATCGTTTCAATCTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGTTATCGATCAGGAGCTCTTCCGATGGCGACCGAGAATGTGCAGAATTTAGCCCCCTTGATTGTCAACCTTGAACCCGTTCGAGAGGAACAAGTACAAAATGCTGTGACGTTCTTTTCATCTCCCAGCGACCCATCTCCAACAGCAGTTGCATCTAGTGCGAGTCAAGTTACTTCATCAAGTAGCTTTATGAAGAACAGATGGAGGGGTGAAGTCACCTTCAAACAATCAGCTACAAGCTCAACCCAAACTTTACAGCCTTCAGCTTCTGCACCCACCACGATTGTTTCATCTACGGGTACATTGAAGGGGTCTGAATTTCATTGGTCTGGTGTACTTCTAGCTGTAGGACTGCTGTCAATTTCAGGTGCTGTAACAGCATTCATAATTAAGAACAAAATAATTCCAAGAATGAAATCCTGGATACGCATGTTGGTAAACGATGGACATGAAGAGATTGTAAAAAGAGAGAGTTCCATTTCAAGTTTGGGAGAAGAAGCAGCTGCTGCTGCGAAAGCAGCTTCAGAAGCGGCAATTGATCTAGCAAGAGCAAGCCAGGATAAGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACTTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCATGATATTTTGAAAGAGATAGCAAAAAATTGTGGAGATTGTGGGTTTATTACATATGCGACTACAGGAACTGGAGACTCTGACAAGTGTCTTTCTGGGTTCGGAAGATGA 1935 42.84 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITHAMLFNILSREEQGKMTSVFPENDKDNFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKCYRSGALPMATENVQNLAPLIVNLEPVREEQVQNAVTFFSSPSDPSPTAVASSASQVTSSSSFMKNRWRGEVTFKQSATSSTQTLQPSASAPTTIVSSTGTLKGSEFHWSGVLLAVGLLSISGAVTAFIIKNKIIPRMKSWIRMLVNDGHEEIVKRESSISSLGEEAAAAAKAASEAAIDLARASQDKLNSKYQAFDVEAPSEVAIDLARASQDMLNSKYQAFDVEALSEVAIDLARASHDILKEIAKNCGDCGFITYATTGTGDSDKCLSGFGR 644
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 24907993 24914339 + ClG42_01g0136100.10 Clacu01g1361 240745
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1361 644 Pfam Peroxisomal membrane protein PEX14-like, central 475 562 IPR054154 -
Clacu01g1361 644 CDD STKc_MAP3K-like 66 338 - -
Clacu01g1361 644 Pfam Protein tyrosine and serine/threonine kinase 63 338 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 ProSiteProfiles Protein kinase domain profile. 57 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 Gene3D Phosphorylase Kinase; domain 1 44 126 - -
Clacu01g1361 644 SUPERFAMILY Protein kinase-like (PK-like) 46 338 IPR011009 -
Clacu01g1361 644 SMART serkin_6 57 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 Gene3D Transferase(Phosphotransferase) domain 1 167 351 - -
Clacu01g1361 644 PANTHER SERINE-THREONINE PROTEIN KINASE 55 339 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu01g1361 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g1361 644 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1361 Clacu-Chr1:24907993 Clacu01g2229 Clacu-Chr1:33489435 2.80E-108 dispersed
Clacu01g2166 Clacu-Chr1:33119396 Clacu01g1361 Clacu-Chr1:24907993 2.10E-16 dispersed
Clacu05g0550 Clacu-Chr5:4618249 Clacu01g1361 Clacu-Chr1:24907993 6.40E-18 transposed
Clacu06g1804 Clacu-Chr6:28527479 Clacu01g1361 Clacu-Chr1:24907993 6.40E-14 transposed
Clacu01g1361 Clacu-Chr1:24907993 Clacu10g1415 Clacu-Chr10:27302698 5.10E-54 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73244 PF07714 PK_Tyr_Ser-Thr 8.40E-57 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1361 - - - 0.0