Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g1361 | ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTCATGCAATGCTTTTTAACATCTTATCACGGGAAGAGCAGGGGAAAATGACTTCTGTATTCCCTGAAAATGATAAAGATAATTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCACTTTGATGAGATCGTTTCAATCTTGGAAACTTATGCGGAGTGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGTTATCGATCAGGAGCTCTTCCGATGGCGACCGAGAATGTGCAGAATTTAGCCCCCTTGATTGTCAACCTTGAACCCGTTCGAGAGGAACAAGTACAAAATGCTGTGACGTTCTTTTCATCTCCCAGCGACCCATCTCCAACAGCAGTTGCATCTAGTGCGAGTCAAGTTACTTCATCAAGTAGCTTTATGAAGAACAGATGGAGGGGTGAAGTCACCTTCAAACAATCAGCTACAAGCTCAACCCAAACTTTACAGCCTTCAGCTTCTGCACCCACCACGATTGTTTCATCTACGGGTACATTGAAGGGGTCTGAATTTCATTGGTCTGGTGTACTTCTAGCTGTAGGACTGCTGTCAATTTCAGGTGCTGTAACAGCATTCATAATTAAGAACAAAATAATTCCAAGAATGAAATCCTGGATACGCATGTTGGTAAACGATGGACATGAAGAGATTGTAAAAAGAGAGAGTTCCATTTCAAGTTTGGGAGAAGAAGCAGCTGCTGCTGCGAAAGCAGCTTCAGAAGCGGCAATTGATCTAGCAAGAGCAAGCCAGGATAAGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTTGATGTTGAAGCACTTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCATGATATTTTGAAAGAGATAGCAAAAAATTGTGGAGATTGTGGGTTTATTACATATGCGACTACAGGAACTGGAGACTCTGACAAGTGTCTTTCTGGGTTCGGAAGATGA | 1935 | 42.84 | MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITHAMLFNILSREEQGKMTSVFPENDKDNFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKCYRSGALPMATENVQNLAPLIVNLEPVREEQVQNAVTFFSSPSDPSPTAVASSASQVTSSSSFMKNRWRGEVTFKQSATSSTQTLQPSASAPTTIVSSTGTLKGSEFHWSGVLLAVGLLSISGAVTAFIIKNKIIPRMKSWIRMLVNDGHEEIVKRESSISSLGEEAAAAAKAASEAAIDLARASQDKLNSKYQAFDVEAPSEVAIDLARASQDMLNSKYQAFDVEALSEVAIDLARASHDILKEIAKNCGDCGFITYATTGTGDSDKCLSGFGR | 644 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24907993 | 24914339 | + | ClG42_01g0136100.10 | Clacu01g1361 | 240745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g1361 | 644 | Pfam | Peroxisomal membrane protein PEX14-like, central | 475 | 562 | IPR054154 | - | |
Clacu01g1361 | 644 | CDD | STKc_MAP3K-like | 66 | 338 | - | - | |
Clacu01g1361 | 644 | Pfam | Protein tyrosine and serine/threonine kinase | 63 | 338 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | ProSiteProfiles | Protein kinase domain profile. | 57 | 342 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | Gene3D | Phosphorylase Kinase; domain 1 | 44 | 126 | - | - | |
Clacu01g1361 | 644 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 338 | IPR011009 | - | |
Clacu01g1361 | 644 | SMART | serkin_6 | 57 | 342 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | Gene3D | Transferase(Phosphotransferase) domain 1 | 167 | 351 | - | - | |
Clacu01g1361 | 644 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 55 | 339 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Clacu01g1361 | 644 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 206 | 218 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | PRINTS | Tyrosine kinase catalytic domain signature | 309 | 331 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | PRINTS | Tyrosine kinase catalytic domain signature | 265 | 287 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | PRINTS | Tyrosine kinase catalytic domain signature | 162 | 175 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | PRINTS | Tyrosine kinase catalytic domain signature | 246 | 256 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g1361 | 644 | PRINTS | Tyrosine kinase catalytic domain signature | 200 | 218 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1361 | Clacu-Chr1:24907993 | Clacu01g2229 | Clacu-Chr1:33489435 | 2.80E-108 | dispersed | |
Clacu01g2166 | Clacu-Chr1:33119396 | Clacu01g1361 | Clacu-Chr1:24907993 | 2.10E-16 | dispersed | |
Clacu05g0550 | Clacu-Chr5:4618249 | Clacu01g1361 | Clacu-Chr1:24907993 | 6.40E-18 | transposed | |
Clacu06g1804 | Clacu-Chr6:28527479 | Clacu01g1361 | Clacu-Chr1:24907993 | 6.40E-14 | transposed | |
Clacu01g1361 | Clacu-Chr1:24907993 | Clacu10g1415 | Clacu-Chr10:27302698 | 5.10E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73244 | PF07714 | PK_Tyr_Ser-Thr | 8.40E-57 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g1361 | - | - | - | 0.0 |