Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1365 ATGGATTCTCCAATCAAGGAAGAGGCAATCAATCCATTAACAGATGAAATTAAGGATTCCGGTGTAGATAACTTCAATGATGGGAGCAAAGAGATGTCTGAAAAGAGGTCTGAGACACGTGAGCGGAAGAAGAGCAAGTATTTGTCCTTTCCATATATAAACTGGGGGCAGAAAGTTATGCCAGCTGAAACAGAAGATATTAAGGTTCTTAAAATTTCTGGTGAAGGCGAGGATGAAAATGCAGTTGAGGGCCAGAATGAAACCCCATTGCTATCTAAATGCAGTGGCAAGTTCTGGAAGAAATGGTACAGGAATATCACCAGTGGGAGCGATGTAACTGATAATCAAGACTTGATGAGTGCATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAAATTGTCTTTATCCAAATGAAAACAATAACTTTGATGCAGTTGCTCAGTTCTTCTCCAGATTTAGAATTTTGATGTTTCATGATGAATCTGTTAATGGTGGTCAAAATGAGGCAATGGCTGCAGATTTGTTTTTTCTTGGGGGAAAGGTGTCAGAGGTTAAGCATCCTTCTTCGGCTGTTAAATCTGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATTACGAAAGTAGAAGGGATGAAATCCAAACCAGTCTCTGGTGATGTGGATTTGACTGGAAAAGATGAAACAAGTCCTGCAGGAGATGCACCGGAAAAAAGCCCTCCGACTTCCAATGTTAAATCAAAAAAAGATAAAGAAAGCTTGGGGAGGGATTTCGTCAATAATCCAGACTTGATGAGTGCATTGCCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAAATTGTCTATATCCAAATGAAAATAATAACTTTGAAACGGTTGCTCGGTTCTTCTCCATATTTAGAATTTTAATGTTTTTGGGGCAAGATGTGTCAGAGGTTAAGCAGCACCCTTCGGCTGCAAAATCTGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCCATTACGAAAATGGAAGAGACGAAATCCAAACCAGTCTCCGGTGAAGTGGATTTGACTGGGAAAGCTGAAAGTCCTGCAGTAGATGCACTGAAAAAAAGCCCTCTGACTGTTAAATCAAAAAAAGATAAAGAAAGCTTTGGGAGATTGAAGACTAAATCCCTTTCTGCCTTGTCAGATGTGAACATAAACCTTTCTTCCTGTGGCTTACTCACAAAAGACTCACCAGAGGTTGGATCCCTTTCACCCAATGGTTTACCAAAGCGAAGGAAGAGAAAGAACGATGGATCACATCCCCAAAGTAAACCAACAACGGAGATACCAGATTTAAATGGAAGTGGTACCGTATCTGGCTTGTTGGTGGAAGATCAGCAGGCTTCCCAACAGAAGTCTGCGCCAAAGAAGAGAAGGAAGCTTGGGGCTGCTAAGGAGCATTCAAAGGCGTCTACTGAATTCATAAATGTAAATGTGAATGACAGCAATAAACCTGGTTCGTTTTTCATCGATCTACAGGTCACAGCTTCACAACCACTTGGTGTAATTCCAGAGCAAAATAAAGTGGATTTTGCAGGAGTGCCTAACCAGTCAGTGAACAATCAGACAATTGGCCAGGATCAGAGCAAATCTGGGGGCAAAAAGCGGAAGAGGAAGGAGAAACCACCCTTGGCGGATCCAAAGGCTATCTTATCTTATTTCAATGGAATGGGTACTGACTCTAGTCAAGGGAAAGATTCCCAGTTGACTAACAACCTTCCGCAGCAGACTAAACCTAAAAGGAGGAGGAGAAGAAAAGGTGAAGCTAGTTTGAACCATCCAAATCCTTCTGACAGCCGATCATATATTTATAATAGAGTTGAAACTGATGGTGAAGGTTTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCTCCCTTGCCTCCGCGGGAGCAGGTTATTACTACTTTTAGCCAGTTTGGATCATTGAAGGAATCCGAGATACAGTTGAAAGATTCCACTGTTGAGATAGTTTTCCTCCGAAGCGCTGACGCTAAGGAAGCAGTTCGGAGTTTAAAGAAAAACAACATTTTTGGCCCAACTCTTTTAAAATATCAGCTCTATCATCTCTCAGCTCCCCCCAGGACGTCAGATTCGGACAGGGCTTGCACAGCACTGGCCTATCCAGCTTCTGAGGGCACTCTGAACCCATCAAAGACTGCTGAATCAGGAAATCAAGCAGGTGAGGCACCACCTATAGAGTTTATAAGGAAAAATCTTCAGATGATGACATCAATGCTGGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCGAAATTGGAGAGTGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCGGGGCCTTCTTCAACGTAA 2397 42.43 MDSPIKEEAINPLTDEIKDSGVDNFNDGSKEMSEKRSETRERKKSKYLSFPYINWGQKVMPAETEDIKVLKISGEGEDENAVEGQNETPLLSKCSGKFWKKWYRNITSGSDVTDNQDLMSASPAEFLSELHFTAVNCLYPNENNNFDAVAQFFSRFRILMFHDESVNGGQNEAMAADLFFLGGKVSEVKHPSSAVKSGIKKRKSQASSITKVEGMKSKPVSGDVDLTGKDETSPAGDAPEKSPPTSNVKSKKDKESLGRDFVNNPDLMSALPAEFLSELHFTAVNCLYPNENNNFETVARFFSIFRILMFLGQDVSEVKQHPSAAKSGIKKRKSQASSITKMEETKSKPVSGEVDLTGKAESPAVDALKKSPLTVKSKKDKESFGRLKTKSLSALSDVNINLSSCGLLTKDSPEVGSLSPNGLPKRRKRKNDGSHPQSKPTTEIPDLNGSGTVSGLLVEDQQASQQKSAPKKRRKLGAAKEHSKASTEFINVNVNDSNKPGSFFIDLQVTASQPLGVIPEQNKVDFAGVPNQSVNNQTIGQDQSKSGGKKRKRKEKPPLADPKAILSYFNGMGTDSSQGKDSQLTNNLPQQTKPKRRRRRKGEASLNHPNPSDSRSYIYNRVETDGEGLGSLLLLTFSSEAPLPPREQVITTFSQFGSLKESEIQLKDSTVEIVFLRSADAKEAVRSLKKNNIFGPTLLKYQLYHLSAPPRTSDSDRACTALAYPASEGTLNPSKTAESGNQAGEAPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLESDIEGLLKKVSSMAGPSST 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24957378 24959774 - ClG42_01g0136500.10 Clacu01g1365 240749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1365 798 MobiDBLite consensus disorder prediction 527 544 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 570 591 - -
Clacu01g1365 798 PANTHER PWWP DOMAIN-CONTAINING PROTEIN 19 216 IPR052657 -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 1 44 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 330 345 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 409 485 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 527 617 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 198 214 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 246 260 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 321 358 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 728 747 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 193 260 - -
Clacu01g1365 798 MobiDBLite consensus disorder prediction 437 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1365 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g756 Blo04g00735 . Bda06g00598 . . Bpe13g00240 Bma06g00220 Bma12g01038 Cmo13g00917 . . . . . . Cpe20g00243 . . . . . . . . . . . . . . . . . . . . Csa01g00850 . Cme12g01695 . . Bda11g01653 . Bpe07g00839 Bpe15g00637 Bma03g00782 . . . . Cma13g00888 Cma18g00169 Car13g00728 Car18g00160 Cpe09g01026 . Bhi08g01607 Tan05g2010 . Lac10g0448 . . . Cla01g01299 Cam01g1430 Cec01g1465 . Clacu01g1365 Cmu01g1271 Cre01g1265 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004937 3 2 2 3 3 1 2 0 1 0 1 1 2 1 1 1 2 0 2 1 1 1 1 1 1 0 2 2 2 1 41