Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1368 ATGGAGGAAACATTTTTTCCGTTTCGTGGGATTAAGAATGATCTAAAAGGAAGACTTCTGTGCTACAGACAGGATTGGACTGGAGGCTTTCGCGCTGGTATCAGGATCTTGGCCCCAACAACGTATATATTCTTTGCTTCAGCAATTCCGGTTATATCGTTTGGGGAGCAGCTAGAAAGGAATACATACGGGACTCTAACTGCCGTACAAACTCTAGCATCAACAGCATTTTGTGGCATTATCCACTCAGTCTTTGGGGGACAGCCTCTGCTTATCCTTGGTGTTGCTGAACCAACTGTTTTGATGTATACGTTCATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGACAGGAACTATTCTTAGCCTGGACAGGATGGGTATGTGTATGGACAGGCATCTTGCTTTTCTTGCTTGCGGTGTTGGGTGCATGCTCCCTGATCAATAGGTTCACACGTCTTGCTGGTGAATTGTTTGGTCTGCTAATTGCCATGCTCTTCATGCAGCAGGCAATACGTGGTGTTGTGGAGGAATTCGGCATACCCCAAAGGGAAAATCCTAATCAGGTGGCGCTCCAACCTCCTTGGCGCTTTGGCAATGGAATGTTTGCATTAGTGCTGTCCTTCGGGCTTCTGCTAACTGCCCTTAAAAGCCGCAAAGCTAGATCATGGCGCTATGGGACTGGTTGCCTACGTGGCCTTATTGCTGATTATGGAGTTCCACTTATGGTGCTCGTATGGACAGCCTTATCTTACATTCCAGTCAACAATGTCCCACTTGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCCTACTCAAATTGGACGGTTATAAAGGAAATGTTGAGAGTGCCTCCATTGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAGCTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTCCTCCTAGGTTTCCTTGTTATCCTGTGTGGACTTATAGGCATACCACCTTCTAATGGTGTAATTCCTCAGTCTCCGATGCACACAAAAAGCTTAGCTACCCTAAAACATCAGCTTTTGCGGAGCAAGCTGGTAGCAGCAGCGCGACAAAGTTTCCGTAAAAATTCGAACTTGAGTCAATTATACCGGAACATGCAAGAGGCATATAATGAGATTCAGACTCCTTTAATTTATCAAAATCCACCAGCTGTGGGGCTGAAGGAGTTGAAGGATTCCACGATCCAACTAGCTTCAAGAACTGGCTACATTGATGCACCTGTTGATGAAACTGTTTTCGATGTGGACAAAGATATTGATGATCTTCTGCCAGTAGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAGTAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAAGATCCCGACTTCGGTTCTTTGGGGCTACTTCGCTTTCATGGCAATCGAGAGCTTACCCGGAAATCAATTTTGGGAAAGGATTTTACTTCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTTCTAGAAACTGTCCCCTTCAAAACAATTGCCACCTTCACCTTGTTTCAGACAGTATATCTGCTGATGTGTTTTGGATTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTCGTCCCTGTGCGCCAGTACTTGCTCCCCAAGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATATGAGGAAGCTCCTGCAGTCACTTTTAATCCGTCATTCGAAGATCGAATGGGAAGAACTCCCAACATTGATGACGGTGAAATACTCGACGAGATGATCACAAGAAGCCGTGGCGAGATTCGACGTACACAAGGTTCAAAAGTGATAAGCTCATCCCCAACGTCTCTAGAGGGCATCAAACCTGCCTACAGCCCACAGATACCACAGAAACTTTACAGTCCACGGATCAATGAGCTGAGAAGAGAGAGAAGTTCTCTATCTCCTGGAAAAGGACTTGAGTTTAAGCTAAATTCTAGTCCTAGTCCTAGGGAAGAACCAGGGCCAGGACCTTCTTTTAGAAATTAG 2154 44.99 MEETFFPFRGIKNDLKGRLLCYRQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTAFCGIIHSVFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTGILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGIPQRENPNQVALQPPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGLIADYGVPLMVLVWTALSYIPVNNVPLGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPLYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRSKLVAAARQSFRKNSNLSQLYRNMQEAYNEIQTPLIYQNPPAVGLKELKDSTIQLASRTGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAVTFNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRRTQGSKVISSSPTSLEGIKPAYSPQIPQKLYSPRINELRRERSSLSPGKGLEFKLNSSPSPREEPGPGPSFRN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25012600 25017194 + ClG42_01g0136800.10 Clacu01g1368 240752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1368 717 Gene3D Helical hairpin bin 18 60 - -
Clacu01g1368 717 MobiDBLite consensus disorder prediction 646 662 - -
Clacu01g1368 717 MobiDBLite consensus disorder prediction 643 717 - -
Clacu01g1368 717 Pfam HCO3- transporter integral membrane domain 202 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu01g1368 717 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu01g1368 717 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Clacu01g1368 717 PANTHER ANION EXCHANGE PROTEIN 6 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Clacu01g1368 717 FunFam probable boron transporter 2 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1368 Clacu-Chr1:25012600 Clacu10g1172 Clacu-Chr10:24365206 0.00E+00 dispersed
Clacu01g1368 Clacu-Chr1:25012600 Clacu07g1288 Clacu-Chr7:27678743 1.60E-218 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1368 K24194 - csv:101203606 1373.99