Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1369 ATGCAGAGCTCTGCGGTCACCTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGCAGGCCTCATACTTCATCCTTCAGCTCTGGATGTAACTCAATTCGGTTATCTTCTTCGTCATCCTCAAATTCCAGAGATCTCGGAGACCTGAACAATGTTGGCCTCCCTTCCTCTTGGCCCCGCCGATCTTGGACTCTGTCTTCGTCTCCTTTTTCCTCCTCGAAACTCCGCCCATGGACCGGTGTGCCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTTAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGGGGAGGCCGCGAGTGCTGGCGGAAGCCTAATGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTATCCGTTTCCTGTGACTGTCACTGCAGTTCAATTTGCCGTAGGCACTGTACTTGTTCTTCTCATGTGGGGACTTAATCTCTACAAAAGACCTAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTGCCACTGGCATTTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCGGTATCGTTCACTCACACAATCAAAGCCATGGAGCCATTTTTTTCAGTTGTCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTTGTTGCGTCCCTTCTGCCAATCGTAGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGCGCAATGGCATCCAATGTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGACTCAATTGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCTGGATTGAACATGAATCAACTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCGGTCGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTTTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1260 47.38 MQSSAVTFSPSLPLLKPRRPHTSSFSSGCNSIRLSSSSSSNSRDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPSLASDSDASHFKVQATAVPDSSGEAASAGGSLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGETPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMNQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25023010 25026176 - ClG42_01g0136900.10 Clacu01g1369 240753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1369 419 PANTHER SOLUTE CARRIER FAMILY 35 111 408 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Clacu01g1369 419 MobiDBLite consensus disorder prediction 1 47 - -
Clacu01g1369 419 MobiDBLite consensus disorder prediction 20 47 - -
Clacu01g1369 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 162 252 - -
Clacu01g1369 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Clacu01g1369 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Clacu01g1369 419 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1369 Clacu-Chr1:25023010 Clacu01g2286 Clacu-Chr1:33841197 1.70E-53 dispersed
Clacu01g2409 Clacu-Chr1:34691589 Clacu01g1369 Clacu-Chr1:25023010 3.20E-53 transposed
Clacu05g0282 Clacu-Chr5:2461866 Clacu01g1369 Clacu-Chr1:25023010 9.30E-65 transposed
Clacu05g1612 Clacu-Chr5:23291699 Clacu01g1369 Clacu-Chr1:25023010 2.70E-61 transposed
Clacu10g0539 Clacu-Chr10:6484350 Clacu01g1369 Clacu-Chr1:25023010 2.40E-62 transposed
Clacu01g1369 Clacu-Chr1:25023010 Clacu09g1956 Clacu-Chr9:34444112 2.00E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1369 K15283 - csv:101203848 712.22