Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1370 ATGCATTCGTTAAGCTTCAAGGTTGTAGGTGATTTTAGTGCGGGATTGAGGATGAATTTTCCGAGACGAGGAAGCTTTTGCTTTCCGGAAATGGAGGTCGGGGCAGTGAGGTGTTTTGGGGGCCGTCGAGCATTTGGAAGAACTTGTAGGATTGTAGCATGTGCTTCGGAGAGAAATGGTGATGGTGGCGGAGGACAGAGCCAGAGCGCCAGTACGAGTCGGAGTCGTTCGTTTCTATCCCGCAGTGAAACTTATGCACTACTGAAGCAGCAATTGGAGGTTGCTGCCAAGTCCGAGGATTATGAAGAAGCTGCAAGGATACGGGACTCATTAAAATTATTTGAAGAGGAAGAGCCAGTTTTGCGTATTCGAAGACTGATGAAGGAGGCTATTTCTAGTGAGAGGTTTGAGGGTATCAGGGTACAAGTTAGGAGTGTATACATAGAAGGCCGAAGCCAACCTTCGAAGAACCAGTACTTTTTTGCATACCGAATAAGAATTACCAATAATTCAAACCGTCCAGTTCAACTTCTCAGAAGACATTGGATTATCACCGATGCAAATGGGAAAACAGAAAATGTCTGGGGTGTTGGTGTTATTGGTGAACAACCAGTTATACTTCCTGGGACTGGATTTGAATATTCATCAGCATGCCCACTAAGTACTGCTAACGGCAGAATGGTTTTAATGCTTCTTCTTCCTCACGCTGCTGCGTTAAATGATTGGTTCGATATGGGCTTGGAGCTCTCTCTTGACCAGGGCAAGCCGGCAGGAGTGGATGATCAATGCAGCAGTGAGTCGACGCATCCTATATATGCATTTGCTCCTCTCTGCCCTCACATTCTGCATTTTTTAACTGCATGGGAGTTTGTTTCAGTCCCTTTTAAATACCAGGGAGACCAGCAAGATGGAAGATGGACCTTGGAGTTTGCTAACAGATTCTCAATCTCTGCCCGACATGAGACATGGCACAAAATTAAAGAGACAAGTGTCATCATATGTAGTCTTCAAACTAGATGGACTGAGGTGGAGAAATATCTAGTAGTCTGGTATTACTATGGATCCCCCAAAAAATCTTGGCAGCCTATCATGACAGATGATACAACAACTTCCAATTACTGGCTCAATTGGAGGGTTCTGCTTTGCATTATATGGGTTCTGCTTACACTGAGTTTTGCATTGTTCCTGATATGGAAATATGAGGCCCGTGGGAATAAGGAATGTGACAGAGAAGAAACTCAGAAAGAAGAAGCTGGAGCTTTGTATGACGATGAAACATGGCGGCCTTGTTTTAAGGGAATACATCCTGCTTGGCTGTTGGCCTTCAGAGTGTTGGCTTTCTGTGTACTCTTGGTGCTCCTCATAGTCACTGCTATTGTTGATGGTGGCGATATATTTTACTTCTACACTCAGTGGACTTTTACTTCAATCACCATTTATTTTGGGCTTGGATCACTACTCTCCATTAATGGCTGCTACCAGTATCAGAAGAAAGTTAGTGGTGAGAAAGTGGATAATGTGGAGGGAGATGCAGAACAAGGCACTTCTGCAGGTGGAAATGGTTCAATTACTTCAAATACAGAGAAAAATCCATCCCTTCGTGAAGAACATTGTCTCGTACGTCAACGTGCAGGATTTTGGGGTTATGTCTTTCAGATTATCTTCCAGATGAATGCAGGTGCTGTTATGCTGACAGATTGCGTCTTTTGGTTCATAATCGTTCCGTTTCTCACCATCAAAGATTACAACCTTAATTTCTTGATAATAAATATGCACACAATCAATGCTGTTTTCTTGCTAGGAGATACCGCTTTGAACTCTTTGCGATTCCCATGGTTTCGAATCGGATATTTCTTCCTCTGGACAGTCGTTTACGTAATCTTTCAATGGATAGTTCACGCTTGTGTGAGATTATGGTGGCCATATCCCTTTCTTGATCTCTCATCTTCATATGCTCCTCTTTGGTACTTATCCGTGGCTCTAATGCACATTCCTTGCTATGGCATCTTCACACTAATCATGAAGCTGAAGCACCATGTATTTTCGACACGGTGCCCACAATCCTATCAATGTACGAGCTTATTATCTTCAAAACCACCAGAAACTCCTGCAAAAATGGCAGAATGCAAGCAAAAAGCCAACTATCCTGGTTGGAAATGGTCTGTATATTACTCCACTTTGACTTTGTTCATGGCATCTTCTATGGTGGACAATGGATAG 2220 43.2 MHSLSFKVVGDFSAGLRMNFPRRGSFCFPEMEVGAVRCFGGRRAFGRTCRIVACASERNGDGGGGQSQSASTSRSRSFLSRSETYALLKQQLEVAAKSEDYEEAARIRDSLKLFEEEEPVLRIRRLMKEAISSERFEGIRVQVRSVYIEGRSQPSKNQYFFAYRIRITNNSNRPVQLLRRHWIITDANGKTENVWGVGVIGEQPVILPGTGFEYSSACPLSTANGRMVLMLLLPHAAALNDWFDMGLELSLDQGKPAGVDDQCSSESTHPIYAFAPLCPHILHFLTAWEFVSVPFKYQGDQQDGRWTLEFANRFSISARHETWHKIKETSVIICSLQTRWTEVEKYLVVWYYYGSPKKSWQPIMTDDTTTSNYWLNWRVLLCIIWVLLTLSFALFLIWKYEARGNKECDREETQKEEAGALYDDETWRPCFKGIHPAWLLAFRVLAFCVLLVLLIVTAIVDGGDIFYFYTQWTFTSITIYFGLGSLLSINGCYQYQKKVSGEKVDNVEGDAEQGTSAGGNGSITSNTEKNPSLREEHCLVRQRAGFWGYVFQIIFQMNAGAVMLTDCVFWFIIVPFLTIKDYNLNFLIINMHTINAVFLLGDTALNSLRFPWFRIGYFFLWTVVYVIFQWIVHACVRLWWPYPFLDLSSSYAPLWYLSVALMHIPCYGIFTLIMKLKHHVFSTRCPQSYQCTSLLSSKPPETPAKMAECKQKANYPGWKWSVYYSTLTLFMASSMVDNG 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25035206 25049780 + ClG42_01g0137000.10 Clacu01g1370 240754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1370 739 ProSiteProfiles UVR domain profile. 82 117 IPR001943 GO:0005515(InterPro)
Clacu01g1370 739 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 82 115 IPR036876 -
Clacu01g1370 739 SUPERFAMILY ApaG-like 137 227 IPR036767 -
Clacu01g1370 739 Pfam UvrB/uvrC motif 88 116 IPR001943 GO:0005515(InterPro)
Clacu01g1370 739 PANTHER UNCHARACTERIZED 375 685 - GO:0016020(PANTHER)
Clacu01g1370 739 Pfam ApaG domain 151 227 IPR007474 -
Clacu01g1370 739 ProSiteProfiles ApaG domain profile. 133 283 IPR007474 -
Clacu01g1370 739 Gene3D ApaG domain 130 229 IPR036767 -
Clacu01g1370 739 MobiDBLite consensus disorder prediction 513 529 - -
Clacu01g1370 739 MobiDBLite consensus disorder prediction 509 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1370 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1946 Clacu-Chr8:28458633 Clacu01g1370 Clacu-Chr1:25035206 5.00E-96 transposed
Clacu10g1176 Clacu-Chr10:24436589 Clacu01g1370 Clacu-Chr1:25035206 1.20E-53 transposed
Clacu01g1370 Clacu-Chr1:25035206 Clacu10g1391 Clacu-Chr10:27040836 1.20E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g764 . . Bda06g00606 . . . . Bma12g01041 Cmo13g00912 Cmo18g00133 . . . . . Cpe20g00248 . . . . . . . . . . . . . . . Cone2ag0912 Cone16ag0096 . Cone19ag0143 Lsi02g00379 Csa01g00858 . Cme12g01688 . . . . Bpe07g00844 . . . Sed08g2518 . . Cma13g00882 Cma18g00175 Car13g00722 Car18g00165 . . Bhi08g01620 Tan05g2000 Cmetu12g1450 Lac10g0457 Hepe07g2221 . . Cla01g01305 . . Cco01g1464 Clacu01g1370 Cmu01g1277 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112