Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1380 ATGTCATCAACAATAAGGGAAACTTCGAGATTAGCTGAGGCCTCAATCAACAGTATGGTCCGACGGATGGTTAATCTTCCAAGAAACATATTAGGAGGATTTTCAAGAGTTATGAATGGAGGAAGAAGAAACCAGACTCTGCCATCCAGTTACCAATATCAGATTCTGCAGCAGGACACACCAAATGTCCCGGAAGAATGGTCTTTCCTCACCAGTTTCCAGTACCAGTATGGCTCGATGCACCCTTTTTTTTACGCATGTCGATTCCCAGAAGCCATGAAGATAGCAGAAGATGAACACAAGTTCTTATTCTTGTATCTGCACTCACCAGATCACCCATTCACACCCTCTTTCTGTGGGGAGACACTGTGCTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCATCTGTTGGGGAGCAGTTGCAAACAGAGGAGATGGACTATATATGGCTACAACATTAGGAGCTACCAGTTTCCCTTTCTGTGCCGTAGTTGCTCCGGCTCCAGGGGAAAGCATAACAGTTCTACAACAGCTTGAAGGGCAAGTTTCTCCAGCTGAGCTGGTGGAGATTCTACAGAGGACAATTGAGGAGCAGGGATCAGCTTTTTGTAGCTCCAAACTACAGCGAGAAGAAAGGATAAGAGCAGATCGCAGGATAAGAGAAGAGCAAGACAGAGCATATCATGCCGCTCTTAAAGAAGATAAGGAAAGGGAAAGACTTAAAAATCTACCTCTGGTGTTACCGAAAAAAGAAAATGATGAGAGGCTCAAGCAGAATTCTCCAAATAAACAACAAAATAGAGCGAAAGAACCTACATTTACTCGTGAAAATCCAAAGAAGGATCCTGTAAGTAAAGGAAAAGATTCTCAGCCTAGTTCCCAGATACTAATAAGGTTTCCAAACGGAGAAAAGAGAGAGAAAAGCTTTTCAAGCATTGACAAGGTGAAATCAATTTATAGTTATATCAATTCGCTCGGCCTGCCAGGTACTCAAAACTATAGATTGATAGCAAACTTCCCAAGAAGAGTATATGGTATGGATGAGATGAATATGACTCTGAAAGATGCTGGCCTTCACCCAAGAGCAATAAAAGATTTGCCAAGGACGAACTACTGGTTTCCTCATGAAGAATTAGTGCCTGAAATTGAAGAATCCGACTTCGAAATCAGATTTTACAGAAAATCCACTTGGATGTCTGCTCCCGTTCAAGACCCATCTTTCGGAAAAGCTACGAGAAATGGTTTCCACAGACTGTTCCAGTACATACAAGGTGCCAATCTGAATTGGTCAAGAATTGCCATGACTGCTCCTGTCTTGACAAGCATTGTCCCTGGGGCTGGCCCTCTTCACTCCTCCTCTTATCTTGTTCAATTCTATCTGCCACTTAAGTTTCAAGCTTCACCCCCTCTTCCTCTTCCTGAACTGAAACTGAAGCCCTGTGGTTGGGAAGCTCACTGTGTTGCAGTTAGAAAATTCTCTGGATTTGCAAGGGATGATAAGGTCATAAAGGAGGCAGAGAAACTTGCCACCAGCTTGAGTAAGTTCCCTTTGGCGAATTCCACCTCTGAAGGGGGTTATGCATATGCCATTGCACAATACGACTCTCCCTTCCGGTTGATCGGACGAGTTAATGAAGTCTGGGTTGATGTCGATGCAGACGATTTGGATGGATGTAAATCCAGTGCCATTGCTGCATTTTGA 1707 43.59 MSSTIRETSRLAEASINSMVRRMVNLPRNILGGFSRVMNGGRRNQTLPSSYQYQILQQDTPNVPEEWSFLTSFQYQYGSMHPFFYACRFPEAMKIAEDEHKFLFLYLHSPDHPFTPSFCGETLCSELVVQFLDANFICWGAVANRGDGLYMATTLGATSFPFCAVVAPAPGESITVLQQLEGQVSPAELVEILQRTIEEQGSAFCSSKLQREERIRADRRIREEQDRAYHAALKEDKERERLKNLPLVLPKKENDERLKQNSPNKQQNRAKEPTFTRENPKKDPVSKGKDSQPSSQILIRFPNGEKREKSFSSIDKVKSIYSYINSLGLPGTQNYRLIANFPRRVYGMDEMNMTLKDAGLHPRAIKDLPRTNYWFPHEELVPEIEESDFEIRFYRKSTWMSAPVQDPSFGKATRNGFHRLFQYIQGANLNWSRIAMTAPVLTSIVPGAGPLHSSSYLVQFYLPLKFQASPPLPLPELKLKPCGWEAHCVAVRKFSGFARDDKVIKEAEKLATSLSKFPLANSTSEGGYAYAIAQYDSPFRLIGRVNEVWVDVDADDLDGCKSSAIAAF 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25113491 25117489 - ClG42_01g0138000.10 Clacu01g1380 240764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1380 568 Pfam UBX domain 292 364 IPR001012 GO:0005515(InterPro)
Clacu01g1380 568 SUPERFAMILY Thioredoxin-like 61 201 IPR036249 -
Clacu01g1380 568 FunFam Heme-binding protein 2 383 558 - -
Clacu01g1380 568 Gene3D Glutaredoxin 61 205 - -
Clacu01g1380 568 MobiDBLite consensus disorder prediction 242 262 - -
Clacu01g1380 568 Gene3D Regulatory factor, effector binding domain 379 559 IPR011256 -
Clacu01g1380 568 SMART ubx_3 287 366 IPR001012 GO:0005515(InterPro)
Clacu01g1380 568 SUPERFAMILY Probable bacterial effector-binding domain 385 552 IPR011256 -
Clacu01g1380 568 ProSiteProfiles UBX domain profile. 290 368 IPR001012 GO:0005515(InterPro)
Clacu01g1380 568 Pfam SOUL heme-binding protein 385 550 IPR006917 -
Clacu01g1380 568 SUPERFAMILY Ubiquitin-like 288 364 IPR029071 -
Clacu01g1380 568 MobiDBLite consensus disorder prediction 271 288 - -
Clacu01g1380 568 SMART 45neu3 68 194 IPR006577 -
Clacu01g1380 568 CDD UBX 297 365 - -
Clacu01g1380 568 Gene3D - 293 365 - -
Clacu01g1380 568 Pfam Fas-associated factor 1 69 140 IPR049483 -
Clacu01g1380 568 PANTHER FAS-ASSOCIATED PROTEIN 11 364 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Clacu01g1380 568 MobiDBLite consensus disorder prediction 242 302 - -
Clacu01g1380 568 CDD UAS 89 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1380 K18726 - - csv:101205471 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0158 Clacu-Chr1:1597473 Clacu01g1380 Clacu-Chr1:25113491 7.60E-55 transposed
Clacu01g1380 Clacu-Chr1:25113491 Clacu05g2755 Clacu-Chr5:34994500 5.40E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g784 . . Bda06g00608 . . . . . Cmo13g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00390 Csa01g00868 Chy12g01254 Cme12g01678 . . . . Bpe07g00849 . . . Sed01g1635 . . Cma13g00874 . Car13g00716 . . . Bhi08g01640 Tan05g1989 Cmetu12g1788 Lac10g0470 . . . Cla01g01314 . . Cco01g1476 Clacu01g1380 Cmu01g1290 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28