Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g1388 ATCAAAATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTGGTTTCGCTTGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAAGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 510 39.61 IKMGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNLNNNNHDITNSSMYFNGGI 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25208404 25208913 - ClG42_01g0138800.10 Clacu01g1388 240772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g1388 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 120 - -
Clacu01g1388 169 Coils Coil 94 114 - -
Clacu01g1388 169 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Clacu01g1388 169 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1388 Clacu-Chr1:25208404 Clacu11g1302 Clacu-Chr11:22050335 7.70E-42 dispersed
Clacu01g1388 Clacu-Chr1:25208404 Clacu10g1381 Clacu-Chr10:26924184 7.60E-50 wgd
Clacu01g1388 Clacu-Chr1:25208404 Clacu06g1830 Clacu-Chr6:28860152 1.80E-51 wgd
Clacu01g1388 Clacu-Chr1:25208404 Clacu09g1968 Clacu-Chr9:34538593 4.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47014 PF03195 LOB 3.80E-42 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g1388 - - - 0.0