Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g1388 | ATCAAAATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACGTTCTTCCTCATCAACGACAAGATGCCGTGGTTTCGCTTGCCTATGAAGCCGAGGCGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAAGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATCTTAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA | 510 | 39.61 | IKMGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNLNNNNHDITNSSMYFNGGI | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 25208404 | 25208913 | - | ClG42_01g0138800.10 | Clacu01g1388 | 240772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g1388 | 169 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 14 | 120 | - | - | |
Clacu01g1388 | 169 | Coils | Coil | 94 | 114 | - | - | |
Clacu01g1388 | 169 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
Clacu01g1388 | 169 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1388 | Clacu-Chr1:25208404 | Clacu11g1302 | Clacu-Chr11:22050335 | 7.70E-42 | dispersed | |
Clacu01g1388 | Clacu-Chr1:25208404 | Clacu10g1381 | Clacu-Chr10:26924184 | 7.60E-50 | wgd | |
Clacu01g1388 | Clacu-Chr1:25208404 | Clacu06g1830 | Clacu-Chr6:28860152 | 1.80E-51 | wgd | |
Clacu01g1388 | Clacu-Chr1:25208404 | Clacu09g1968 | Clacu-Chr9:34538593 | 4.30E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47014 | PF03195 | LOB | 3.80E-42 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g1388 | - | - | - | 0.0 |